Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20haematobium_20[refseq_20GCF_5F000699445.1_202014-06- 09] 29,834 sequences; 375,894,156 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq1010 232 8e-56 seq7458 107 2e-18 >seq1010 Length=92424 Score = 232 bits (256), Expect = 8e-56 Identities = 612/929 (66%), Gaps = 49/929 (5%) Strand=Plus/Plus Query 33293 TTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTTC 33352 ||| |||||||| || || || || ||||| || || |||||||| | ||||||||||| Sbjct 81947 TTGATATTCACCAACTCGCTTCTCAAAAAAGTTTGTCTTTCCTTCGATCGATATATTTTC 82006 Query 33353 CATGAAATCAAACGGATTGGTA---------------------AC-ATT----GTAAAtt 33386 ||| || ||||| |||||| | || ||| | ||||| Sbjct 82007 CATAAAGTCAAAAGGATTGTCAGAATGATACATCTAAACGAAAACGATTAAAAGAAAATT 82066 Query 33387 t--------ttttAAATCCCAATTCAGAAATCAATCTATCTGCGACGAATTCTATATATG 33438 | ||| | | || | |||| | | || ||||||| ||||| || || Sbjct 82067 TACAAACCTTTTCATAACCAAGTTCAACTAGTAGCCTGTCTGCGATAAATTCAATGTACT 82126 Query 33439 TTTTCATCATTTCACAATTCATTCCTATGAGTTTAACTGGAAGAGCCACAGTAAGAAATT 33498 ||||| || ||||||||||| || | | ||||| ||||| | | | ||| | Sbjct 82127 GACACATCAGTTTGCAATTCATTCCAATTAAGCTGACTGGTAGAGCTTCTGATAAAAACT 82186 Query 33499 CTTGTTCAATGGATACCGCATTTGTTATAATAAA-TCTA-ACGGTTTCTTCACTCGGTGG 33556 ||||||| || ||||| | | |||| || | || | ||| |||||| || || Sbjct 82187 CTTGTTCTATTAGAACCGCCTCTCTTATTATTGACTCGACACG--TTCTTC---CGAAGG 82241 Query 33557 ATGTA--ATAA-ATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCT 33613 | | |||| ||||||||| | | ||| |||||||| || || || || |||||||| Sbjct 82242 CTTTTTGATAATATGTTTAAATAATAGACAAGCGAAATCACAATGTAGTCCTTCGTCTCT 82301 Query 33614 ACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAA 33673 ||| |||||||| || ||| | ||||| ||||| || || || || |||||||| || Sbjct 82302 ACTGATTAATTCATTGCTAAAAGACAGTCCAGGCATAAGACCTCGTTTCTTAAGCCAGAA 82361 Query 33674 TATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCT 33733 ||| | ||||| || ||||| || | ||||| ||||| ||||| ||||| | | Sbjct 82362 TATAGCTGCGAAGCTACCAGAAAAAAAAACACCTTCCACTGCTGCAAAAGCAATTAAACG 82421 Query 33734 CTCTCCATAACCGGCGCTGTCATGT---ATCCACTTTTGAGCCCAATCGGCCTTCTTTTT 33790 ||| || || | || || | ||||| | | ||||| | ||||| ||| Sbjct 82422 TTCTGCAAAAGTAGATTTGGAATCTCCAATCCAATCTAATGCCCACTGAGCCTTTTTTGC 82481 Query 33791 TACACAAGGCATCGTTTC-TATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAA 33849 ||||||| | ||| | |||||| || |||||| ||| |||| || ||||| | Sbjct 82482 AACACAAGTTA-AGTTGCTTATGGCGTTGAAGAGAAAGTCCCTTTCTTTGGAGTCTTTGA 82540 Query 33850 CATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAA 33909 || ||||| || || | | |||||||| || ||||| || || || || ||||| | Sbjct 82541 TGTATGTATCAATTAATAAAGAGTACATTTCAGAGTGAATATTCTCGATAGCTATCTGCA 82600 Query 33910 ATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCTGCTAAAT 33969 ||| || || || | | |||| | ||||| ||||| | || |||||| | | Sbjct 82601 TTCCATAAAAGCAACGAACCTCTGGGATCTGGACTTCCTGGCTGAAGCGTTCTAGGAGGT 82660 Query 33970 TTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATT 34029 | || || ||||| ||||| || ||||| || || || || | ||| |||| Sbjct 82661 TCTCGAGTACAATTCCGTCACTCGCCGCAAAGAAAGCTAACACGTAGGATATGAAATGAC 82720 Query 34030 TTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCA 34089 ||| | | || | ||||| ||| |||||| || | |||||| ||||||| Sbjct 82721 GTTCCCCAACCTTGAGCGACTCCCAATGTATGAGATCTTTGGACAAATCCACCTCTTCCA 82780 Query 34090 CTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGGATTG 34149 | |||||||| || || | ||||| ||||| | || ||||| || ||||||| || | Sbjct 82781 CAGTCCAAAAAGAAGCTACAGCCTTCTTATAAAAATGCCAGACATCGTGATATTCTATGG 82840 Query 34150 GGAAAATAACAAATCTATTTGGATTTGGT 34178 |||||| || || | | ||| |||||| Sbjct 82841 GGAAAAGGACGAAACGGTGTGGGTTTGGT 82869 >seq7458 Length=1001 Score = 107 bits (118), Expect = 2e-18 Identities = 134/184 (73%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 63546 CCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCCT 63605 || || ||||| || ||||||| || | ||| ||| ||| ||||| || || |||||| Sbjct 61 CCAATACCCCCGGCATTTTTAGATATAATTGCACATTCTTTCAACGTATCGTAAATGCCT 120 Query 63606 TCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAGTAGTT 63665 ||||| ||||| || |||| | | |||||||| || || | || | | |||| Sbjct 121 TCTATACTATCGTCTTTCATAGTGATAAGAAAACAACTTGAAAGCTGTGGTTTGGGAGTT 180 Query 63666 CCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTAC 63725 || || ||||| | || || ||||| || ||||||||||||||||| | || || ||| Sbjct 181 CCAGCGTTAAAAAGTGTCGGTGAAGCATGTGTAAACCATTTTTCAGACATCAGGTTATAC 240 Query 63726 GTCT 63729 |||| Sbjct 241 GTCT 244 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629582725271520