Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20haematobium_20[refseq_20GCF_5F000699445.1_202014-06- 09] 29,834 sequences; 375,894,156 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq1010 201 1e-46 seq7458 109 5e-19 >seq1010 Length=92424 Score = 201 bits (222), Expect = 1e-46 Identities = 595/916 (65%), Gaps = 55/916 (6%) Strand=Plus/Plus Query 11341 TTGATATTCACTAACTCGTCGTTCGAAAAAATTAGTCTTACCTTCTAGTGATATATACTC 11400 ||||||||||| |||||| || ||||| || ||||| ||||| | ||||||| || Sbjct 81947 TTGATATTCACCAACTCGCTTCTCAAAAAAGTTTGTCTTTCCTTCGATCGATATATTTTC 82006 Query 11401 CATAAAGCTAAAAGGATTAT-------ATACATTGAAG---------------------- 11431 ||||||| ||||||||| | |||||| || Sbjct 82007 CATAAAGTCAAAAGGATTGTCAGAATGATACATCTAAACGAAAACGATTAAAAGAAAATT 82066 Query 11432 -----ACTTTTTCACAACCTAACTCTGTTAATAATCTATCTGCGACGAATTCTATATACT 11486 || |||||| |||| | || || || || ||||||| ||||| || |||| Sbjct 82067 TACAAACCTTTTCATAACCAAGTTCAACTAGTAGCCTGTCTGCGATAAATTCAATGTACT 82126 Query 11487 GAGACATTAAACAACAATTCATACCTAT-AAGATCCACCGGAATAGCAACTGTCAAAAAC 11545 || |||| | |||||||| || || ||| | || || | ||| ||| |||||| Sbjct 82127 GACACATCAGTTTGCAATTCATTCCAATTAAGCTG-ACTGGTAGAGCTTCTGATAAAAAC 82185 Query 11546 TCCTTTTCTATATTAACCGCATCAATGATTATCGACGTTATAACTTCCTTAGATGGTGGA 11605 || | |||||| |||||| || | ||||| ||| | | ||| | || || Sbjct 82186 TCTTGTTCTATTAGAACCGCCTCTCTTATTATTGACTCGACACGTTCTTCCGAAGGCTTT 82245 Query 11606 TGTAATAA-ATGTTTAAACATTAAACACGCAAAATCACAATGTAAACCTTCGTCTCTACT 11664 | | |||| ||||||||| | || ||| || ||||||||||||| |||||||||||||| Sbjct 82246 T-TGATAATATGTTTAAATAATAGACAAGCGAAATCACAATGTAGTCCTTCGTCTCTACT 82304 Query 11665 TATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGtttttttATCCAAAATAT 11724 |||| |||||| ||| | | ||| ||||| | |||||||| || | ||| ||||| Sbjct 82305 GATTAATTCATTGCTAAAAGACAGTCCAGGCATAAGACCTCGTTTCTTAAGCCAGAATAT 82364 Query 11725 AGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTC 11784 ||| || || ||||||||| || | || ||||| |||||||| || | || | ||| Sbjct 82365 AGCTGCGAAGCTACCAGAAAAAAAAACACCTTCCACTGCTGCAAAAGCAATTAAACGTTC 82424 Query 11785 TCCA----TATACCTTGTTGCTAGATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTA 11840 | || || | | | || | ||||| | | ||||| | ||| || ||| | Sbjct 82425 TGCAAAAGTAGATTTGGAATCTCCA-ATCCAATCTAATGCCCACTGAGCCTTTTTTGCAA 82483 Query 11841 CGCA--TTCCATTGTTTCTATAGCGTTAAATAAATGCATTTTTTCTATATTATCTCTTAC 11898 | || || ||| | ||| ||||| || | | ||||| | ||| | | Sbjct 82484 CACAAGTTAAGTTGCT--TATGGCGTTGAAGAGAAAGTCCCTTTCTTTGGAGTCTTTGAT 82541 Query 11899 ATATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAA 11958 |||||||| ||||||||| |||||||| || |||||||| || |||||||| || | Sbjct 82542 GTATGTATCAATTAATAAAGAGTACATTTCAGAGTGAATATTCTCGATAGCTATCTGCAT 82601 Query 11959 TCCATAGAAACATCGTGCCTCTGAACACTGTACATCCACATAAAATCTTTCCGCTAAATT 12018 |||||| || || || |||||| ||| || ||| || | ||| | || Sbjct 82602 TCCATAAAAGCAACGAACCTCTGGGATCTGGACTTCCTGGCTGAAGCGTTCTAGGAGGTT 82661 Query 12019 CTCATTTACAATACCATCACTAGATGCAAAAAATGCTAGTATATGTTTTATAAAGTATTT 12078 ||| |||||| || ||||| | ||||| || |||| | | ||| || | Sbjct 82662 CTCGAGTACAATTCCGTCACTCGCCGCAAAGAAAGCTAACACGTAGGATATGAAATGACG 82721 Query 12079 TTC----GTCTTTAGTTAATTTATCCCAATCATCTAAATCTTTTGATAAATCTACTTCTT 12134 ||| ||| || | ||||||| | |||||| || ||||| || |||| Sbjct 82722 TTCCCCAACCTTGAGCGA----CTCCCAATGTATGAGATCTTTGGACAAATCCACCTCTT 82777 Query 12135 CAACGGTCCAAAAACTTGCCACTGATTGTTTATACATTTTCCAGATATCATGATACTTAA 12194 | || ||||||||| || || | | ||||| | | ||||| ||| ||||| | | Sbjct 82778 CCACAGTCCAAAAAGAAGCTACAGCCTTCTTATAAAAATGCCAGACATCGTGATATTCTA 82837 Query 12195 TAGGGAAAATAACGAA 12210 | ||||||| ||||| Sbjct 82838 TGGGGAAAAGGACGAA 82853 >seq7458 Length=1001 Score = 109 bits (120), Expect = 5e-19 Identities = 126/170 (74%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 38295 TCCTATTCCACCTGCATGTTTTGATATTAAAGCGCATTGTTTTAACGTATCAAATATACC 38354 ||| || || || |||| ||| ||||| | || |||| ||| |||||||| | || || Sbjct 60 TCCAATACCCCCGGCATTTTTAGATATAATTGCACATTCTTTCAACGTATCGTAAATGCC 119 Query 38355 TTCTATACTGTCATCCTTTATTGGTAGTATAAAACAACTAGACATTTGAGGCAATGGAGT 38414 ||||||||| || || || || | | | ||||||||| || | || || ||||| Sbjct 120 TTCTATACTATCGTCTTTCATAGTGATAAGAAAACAACTTGAAAGCTGTGGTTTGGGAGT 179 Query 38415 TCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACA 38464 ||| |||||||| | ||| || || |||||| | ||||||||||| |||| Sbjct 180 TCCAGCGTTAAAAAGTGTCGGTGAAGCATGTGTAAACCATTTTTCAGACA 229 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468350075388960