Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20haematobium_20[refseq_20GCF_5F000699445.1_202014-06- 09] 29,834 sequences; 375,894,156 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq2294 98.7 1e-15 seq1010 89.7 5e-13 >seq2294 Length=11734 Score = 98.7 bits (108), Expect = 1e-15 Identities = 169/236 (72%), Gaps = 7/236 (3%) Strand=Plus/Minus Query 139532 ACATGGCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAA 139591 ||||| || || |||| |||| ||| | || | || |||||||| || ||||| || Sbjct 1573 ACATG-CCTCCACGTAGGCGCAGAACAAGATGTAAGGTTGACTCTTTCTGGATGTTGTAG 1515 Query 139592 TCGCTCATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATC 139650 || || || | || | ||||| | ||| |||||||| | |||| |||||| || || Sbjct 1514 TCAGACAGAGTACGTCCA-TCTTCCAACTGCTTACCAGCGAATATCAAACGTTGTTGGTC 1456 Query 139651 GGGAGGTATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGG 139709 ||||| || ||||||||||| ||| |||| | ||| | | || | || || | | Sbjct 1455 AGGAGGAATACCTTCTTTGTC-TTGAATTTTAGCTTTCACATTCTCAATAGTATCACTAG 1397 Query 139710 GCTCCACCTC-AACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| ||||| ||||| | |||||| || | |||||| || || || |||||||| Sbjct 1396 GCTCAACCTCTAACGG-AATCGTCTTACCAGGCAACGTCTTCACAAAGATTTGCAT 1342 >seq1010 Length=92424 Score = 89.7 bits (98), Expect = 5e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 52564 AAAAAGGATGATTGGGCATTGAAATGGATCGAAAACGACAAAGCCACTTTTGCCGAACGT 52623 ||||||| | | |||||||| | ||||| | | | |||| | |||||||| |||||| Sbjct 82478 AAAAAGGCTCAGTGGGCATTAGATTGGATTGGAGATTCCAAATCTACTTTTGCAGAACGT 82419 Query 52624 CTGGTCGCGTTTGCTATAGTGGAAGGTGTGtttttttCGGGTAGTTTTGCGGCAATATT- 52682 | | || ||||| |||||||||||| |||||||| ||||| || || || ||||| Sbjct 82418 TTAATTGCTTTTGCAGCAGTGGAAGGTGTTTTTTTTTCTGGTAGCTTCGCAGCTATATTC 82359 Query 52683 TTACATCAAAACCTTGGGCATAATGCCCGGCCTCACGTTTAGCAACGAGTTGATATCGCG 52742 | | | | || | || | | ||||| || || | |||||||| || || || | Sbjct 82358 TGGCTTAAGAAACGAGGTC-TTATGCCTGGACTGTCTTTTAGCAATGAATTAATCAGTAG 82300 Query 52743 CGACGAAGGAATGCACACAGATTTTGCGTGT 52773 ||||||||| | || ||||| || ||| Sbjct 82299 AGACGAAGGACTACATTGTGATTTCGCTTGT 82269 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495879005332800