Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20haematobium_20[refseq_20GCF_5F000699445.1_202014-06- 09] 29,834 sequences; 375,894,156 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq1010 233 3e-56 seq7458 109 8e-19 seq7115 87.8 3e-12 >seq1010 Length=92424 Score = 233 bits (258), Expect = 3e-56 Identities = 611/928 (66%), Gaps = 47/928 (5%) Strand=Plus/Plus Query 49671 TTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTTC 49730 ||| |||||||| || || || || ||||| || || |||||||| | ||||||||||| Sbjct 81947 TTGATATTCACCAACTCGCTTCTCAAAAAAGTTTGTCTTTCCTTCGATCGATATATTTTC 82006 Query 49731 CATGAAATCAAACGGATTGGTAACATTATAAAttttt----------ttAAATCCCAATT 49780 ||| || ||||| |||||| | || ||| || | ||||| |||| Sbjct 82007 CATAAAGTCAAAAGGATTGTCAGAATGATACATCTAAACGAAAACGATTAAAAGAAAATT 82066 Query 49781 CAGAAA-----------------TCAAT-------CTATCCGCGACAAATTCTATATATG 49816 | ||| |||| || || |||| |||||| || || Sbjct 82067 TACAAACCTTTTCATAACCAAGTTCAACTAGTAGCCTGTCTGCGATAAATTCAATGTACT 82126 Query 49817 TTTTCATCATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATT 49876 ||||| || ||||||||||| || | | ||||| ||||| | | | ||| | Sbjct 82127 GACACATCAGTTTGCAATTCATTCCAATTAAGCTGACTGGTAGAGCTTCTGATAAAAACT 82186 Query 49877 CTTGTTCAATGGATACCGCATCTGTTATAATAGA-TCTA-ACGGTTTCTTCACTCGG-TG 49933 ||||||| || ||||| ||| |||| || || || | ||| |||||| || | Sbjct 82187 CTTGTTCTATTAGAACCGCCTCTCTTATTATTGACTCGACACG--TTCTTCCGAAGGCTT 82244 Query 49934 GATGCAATAA-ATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTA 49992 || |||| ||||||||| | | ||| |||||||| || || || || ||||||||| Sbjct 82245 TTTG--ATAATATGTTTAAATAATAGACAAGCGAAATCACAATGTAGTCCTTCGTCTCTA 82302 Query 49993 CTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAAT 50052 || |||| ||| ||| ||| | ||||| ||||| || || || || |||||||| ||| Sbjct 82303 CTGATTAATTCATTGCTAAAAGACAGTCCAGGCATAAGACCTCGTTTCTTAAGCCAGAAT 82362 Query 50053 ATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTC 50112 || | || || |||||||| || | ||||| ||||| ||||| |||| | | Sbjct 82363 ATAGCTGCGAAGCTACCAGAAAAAAAAACACCTTCCACTGCTGCAAAAGCAATTAAACGT 82422 Query 50113 TCTCCATAACTGGCGCTGTCATGT---ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTT 50169 ||| || || | | || || | ||||| | | ||||| | ||||| ||| Sbjct 82423 TCTGCAAAAGTAGATTTGGAATCTCCAATCCAATCTAATGCCCACTGAGCCTTTTTTGCA 82482 Query 50170 ACACAAGGCATCGTTTC-TATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAAC 50228 ||||||| | ||| | |||||| || |||||| ||| |||| || ||||| | Sbjct 82483 ACACAAGTTA-AGTTGCTTATGGCGTTGAAGAGAAAGTCCCTTTCTTTGGAGTCTTTGAT 82541 Query 50229 ATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAA 50288 || ||||| || || | | |||||||| || ||||| || || || || ||||| | Sbjct 82542 GTATGTATCAATTAATAAAGAGTACATTTCAGAGTGAATATTCTCGATAGCTATCTGCAT 82601 Query 50289 TCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATT 50348 ||| || || || | | |||| | ||||| ||||| | || ||||| | || Sbjct 82602 TCCATAAAAGCAACGAACCTCTGGGATCTGGACTTCCTGGCTGAAGCGTTCTAGGAGGTT 82661 Query 50349 TTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTT 50408 || || ||||||||||| || ||||| || || || || | ||| ||||| Sbjct 82662 CTCGAGTACAATTCCGTCACTCGCCGCAAAGAAAGCTAACACGTAGGATATGAAATGACG 82721 Query 50409 TTCGTTGGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCAC 50468 ||| | || | ||||| ||| |||||| || | ||| || |||||||| Sbjct 82722 TTCCCCAACCTTGAGCGACTCCCAATGTATGAGATCTTTGGACAAATCCACCTCTTCCAC 82781 Query 50469 TGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGG 50528 |||||||| || || | ||||| ||||| | || ||||| || ||||||| || || Sbjct 82782 AGTCCAAAAAGAAGCTACAGCCTTCTTATAAAAATGCCAGACATCGTGATATTCTATGGG 82841 Query 50529 GAAAATAACAAATCTATTTGGATTTGGT 50556 ||||| || || | | ||| |||||| Sbjct 82842 GAAAAGGACGAAACGGTGTGGGTTTGGT 82869 >seq7458 Length=1001 Score = 109 bits (120), Expect = 8e-19 Identities = 137/186 (74%), Gaps = 4/186 (2%) Strand=Plus/Plus Query 80218 CCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCC 80277 || || ||||| || ||||||| || | ||| ||| ||| |||||||| || ||||| Sbjct 61 CCAATACCCCCGGCATTTTTAGATATAATTGCACATTCTTTCAACGTATCGTAAATGCCT 120 Query 80278 TCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACA--TTTGGTGACGACTAG 80335 ||||| ||||| || |||| | | |||||||| || || | | |||| | || Sbjct 121 TCTATACTATCGTCTTTCATAGTGATAAGAAAACAACTTGAAAGCTGTGGTTTGGG--AG 178 Query 80336 TTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGT 80395 |||| || ||||| | || || ||||| || ||||||||||||||||||| || || | Sbjct 179 TTCCAGCGTTAAAAAGTGTCGGTGAAGCATGTGTAAACCATTTTTCAGACATCAGGTTAT 238 Query 80396 ACGTCT 80401 |||||| Sbjct 239 ACGTCT 244 >seq7115 Length=1065 Score = 87.8 bits (96), Expect = 3e-12 Identities = 145/205 (71%), Gaps = 6/205 (3%) Strand=Plus/Minus Query 80623 GGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTA 80682 |||||||| ||| || |||||||| || ||| ||||| || || || || | Sbjct 591 GGAGAATGCTTCTTGGTTCGAGGATTAATGTAACCGAACAAATCTTCAATAACATCTGAA 532 Query 80683 AA--TAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAATGG 80740 || ||| ||| |||||||||||||||||||| ||||| | | || || ||||| | Sbjct 531 AACCTAGATTTC--GTTTCCTTGTGTAGATTTGAAACGGCAAGACGAGCAGCCAAAATAG 474 Query 80741 CATAATCTGGATGTTGTGTAGTACAAG-TGGCTGCTATTTCGGCTGCCAGAGTGTCCAAT 80799 |||| || |||||| ||| | || | | || | | |||||||||||| | || ||| Sbjct 473 CATATTCATGATGTTTTGTTAT-CATGCTTGCGCATGTCTCGGCTGCCAGATTATCTAAT 415 Query 80800 TCTACCGTTGTTACTCCATTATATA 80824 || || || || ||||| ||||| Sbjct 414 TCCACAGTAGTCACTCCCGGATATA 390 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718000939607760