Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20haematobium_20[refseq_20GCF_5F000699445.1_202014-06- 09] 29,834 sequences; 375,894,156 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq1010 203 3e-47 >seq1010 Length=92424 Score = 203 bits (224), Expect = 3e-47 Identities = 453/675 (67%), Gaps = 50/675 (7%) Strand=Plus/Plus Query 13583 TTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13642 ||||||||||| ||||| || ||||| ||||| || || ||||| | ||||||||||| Sbjct 81947 TTGATATTCACCAACTCGCTTCTCAAAAAAGTTTGTCTTTCCTTCGATCGATATATTTTC 82006 Query 13643 CATAAAATCAAATGGATTT----ATTGACA----TAAAC--------------------- 13673 |||||| ||||| ||||| | ||| | ||||| Sbjct 82007 CATAAAGTCAAAAGGATTGTCAGAATGATACATCTAAACGAAAACGATTAAAAGAAAATT 82066 Query 13674 -----ACTTTATCACAACCTAGTTCTAATAGTAATCTATCAGCAATAAACTCAATATATT 13728 || || ||| |||| ||||| | ||||| || || || ||||| ||||| || | Sbjct 82067 TACAAACCTTTTCATAACCAAGTTCAACTAGTAGCCTGTCTGCGATAAATTCAATGTACT 82126 Query 13729 GAGACATTAAATCACAATTCATACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATT 13788 || |||| | | |||||||| || |||| | || || | | | |||||| | Sbjct 82127 GACACATCAGTTTGCAATTCATTCCAATTAAGCTGACTGGTAGAGCTTCTGATAAAAACT 82186 Query 13789 CTTTTTCTAT-AGACACAGCCTCTTTTATAAT--AATTGTAATAATCTCATTAGAAGGAG 13845 ||| |||||| ||| || |||||| |||| || | | | | ||| | ||||| Sbjct 82187 CTTGTTCTATTAGA-ACCGCCTCTCTTATTATTGACTCGACACGTTCT--TCCGAAGGCT 82243 Query 13846 GATATTTTAGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTAC 13905 | | | ||||||||| | || ||| || ||||||||||| || || || ||||||| Sbjct 82244 TTTTGATAATATGTTTAAATAATAGACAAGCGAAATCACAATGTAGTCCTTCGTCTCTAC 82303 Query 13906 TAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATA 13965 | || | ||| || ||| | | ||| ||||| | |||||||| || | ||| |||| Sbjct 82304 TGATTAATTCATTGCTAAAAGACAGTCCAGGCATAAGACCTCGTTTCTTAAGCCAGAATA 82363 Query 13966 TTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTT 14025 | || || || || ||||| || | || || ||||| ||||| || ||||| |||| Sbjct 82364 TAGCTGCGAAGCTACCAGAAAAAAAAACACCTTCCACTGCTGCAAAAGCAATTAAACGTT 82423 Query 14026 CTCCAAACGATGCTTTTTTGT-TCGATATCCATTTTCTAGCCCATTCAGAtttttttttA 14084 || |||| | | ||| | || | ||||| | | ||||| | || |||||| | Sbjct 82424 CTGCAAAAGTAGATTTGGAATCTCCA-ATCCAATCTAATGCCCACTGAGCCTTTTTTGCA 82482 Query 14085 ATAAAA--TCCATTGTTTCAATAGCATTAAATAAATATTCCTTCTCTTT--AGTACTTGA 14140 | | || | ||| || || || || || | | | ||| | ||||| ||| ||| Sbjct 82483 ACACAAGTTAAGTTGCTT--ATGGCGTTGAAGAGAAAGTCCCTTTCTTTGGAGTCTTTG- 82539 Query 14141 AATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTG 14200 |||||||||||||| | ||| |||||||||||||| || || || ||||||||||| Sbjct 82540 -ATGTATGTATCAATTAATAAAGAGTACATTTCAGAGTGAATATTCTCGATAGCTATCTG 82598 Query 14201 AAAACCATAAAAGCA 14215 | ||||||||||| Sbjct 82599 CATTCCATAAAAGCA 82613 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479549097435600