Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20haematobium_20[refseq_20GCF_5F000699445.1_202014-06- 09] 29,834 sequences; 375,894,156 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq1010 210 2e-49 >seq1010 Length=92424 Score = 210 bits (232), Expect = 2e-49 Identities = 572/872 (66%), Gaps = 48/872 (6%) Strand=Plus/Plus Query 13371 TTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13430 ||||||||||| ||||| || ||||||||||| || || ||||| | ||||||||||| Sbjct 81947 TTGATATTCACCAACTCGCTTCTCAAAAAAGTTTGTCTTTCCTTCGATCGATATATTTTC 82006 Query 13431 CATAAAATCGAATGGATTTGT-----TGACA----TAAAC-------------------- 13461 |||||| || || ||||| || ||| | ||||| Sbjct 82007 CATAAAGTCAAAAGGATT-GTCAGAATGATACATCTAAACGAAAACGATTAAAAGAAAAT 82065 Query 13462 ------ACTTTATCACAACCTAGTTCTAATAATAATCTATCAGCAATAAACTCAATATAT 13515 || || ||| |||| ||||| | || || || || || ||||| ||||| || Sbjct 82066 TTACAAACCTTTTCATAACCAAGTTCAACTAGTAGCCTGTCTGCGATAAATTCAATGTAC 82125 Query 13516 TGAGACATTAAATCACAATTCATACCTATTAGTTTTACAGGAATTATATTAGTTAAAAAT 13575 ||| |||| | | |||||||| || |||| | || || | | | |||||| Sbjct 82126 TGACACATCAGTTTGCAATTCATTCCAATTAAGCTGACTGGTAGAGCTTCTGATAAAAAC 82185 Query 13576 TCTTTTTCTAT-AGACACAGCCTCGTTTATAATAATCTTAATAATGTCATTAGAAGGAGG 13634 |||| |||||| ||| || ||||| |||| || || | | || | ||||| Sbjct 82186 TCTTGTTCTATTAGA-ACCGCCTCTCTTATTATTGACTCGACACGTTCTTCCGAAGGCTT 82244 Query 13635 ATATTTTAGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACT 13694 | | | ||||||||| | || ||| || ||||||||||| || || || |||||||| Sbjct 82245 TTTGATAATATGTTTAAATAATAGACAAGCGAAATCACAATGTAGTCCTTCGTCTCTACT 82304 Query 13695 AATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATAT 13754 || | ||| || ||| | | ||| ||||| | |||||||| || | ||| ||||| Sbjct 82305 GATTAATTCATTGCTAAAAGACAGTCCAGGCATAAGACCTCGTTTCTTAAGCCAGAATAT 82364 Query 13755 TGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTC 13814 || ||||| || ||||| || | || || ||||| ||||| || |||| ||||| Sbjct 82365 AGCTGCGAAGCTACCAGAAAAAAAAACACCTTCCACTGCTGCAAAAGCAATTAAACGTTC 82424 Query 13815 TCCAAACGATGCTTTTTTGTTTGATATCCATTTTCTAGCCCATTCAGAtttttttttAAT 13874 | |||| | | ||| | | ||||| | | ||||| | || |||||| || Sbjct 82425 TGCAAAAGTAGATTTGGAATCTCCAATCCAATCTAATGCCCACTGAGCCTTTTTTGCAAC 82484 Query 13875 AAAA--TCCATTGTTTCGATTGCATTGAATA-AATGTTCCTTCTCTTT--AGTACTTGAA 13929 | || | ||| || || || ||||| | || || |||| ||||| ||| ||| Sbjct 82485 ACAAGTTAAGTTGCTT--ATGGCGTTGAAGAGAAAGTCCCTT-TCTTTGGAGTCTTTG-- 82539 Query 13930 ATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGA 13989 |||||||||||||| | ||| |||||||||||||| || || || ||||||||||| Sbjct 82540 ATGTATGTATCAATTAATAAAGAGTACATTTCAGAGTGAATATTCTCGATAGCTATCTGC 82599 Query 13990 AAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCCGAGTAAAATCTTTCTGCCAAG 14049 | |||||||| || | | | |||| || || ||| | || | |||| | | Sbjct 82600 ATTCCATAAAAGCAACGAACCTCTGGGATCTGGACTTCCTGGCTGAAGCGTTCTAGGAGG 82659 Query 14050 TTTTCATTAACAATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTAT 14109 || || ||||| || ||||| || ||||| || || || | || || || | Sbjct 82660 TTCTCGAGTACAATTCCGTCACTCGCCGCAAAGAAAGCTAACACGTAGGATATGAAATGA 82719 Query 14110 TGCTCTTCATTGTTGAGTTTTTTCCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCA 14169 | || || ||||| | ||||| | ||| || || | ||| || || || Sbjct 82720 CGTTCCCCAACCTTGAGCGACTCCCAATGTATGAGATCTTTGGACAAATCCACCTCTTCC 82779 Query 14170 ACTGTCCAAAAACTAGCGACAGCTTTTTTATA 14201 || ||||||||| ||| ||||| || ||||| Sbjct 82780 ACAGTCCAAAAAGAAGCTACAGCCTTCTTATA 82811 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478410322271760