Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20haematobium_20[refseq_20GCF_5F000699445.1_202014-06- 09] 29,834 sequences; 375,894,156 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq1010 250 3e-61 seq7458 114 2e-20 >seq1010 Length=92424 Score = 250 bits (276), Expect = 3e-61 Identities = 616/929 (66%), Gaps = 49/929 (5%) Strand=Plus/Plus Query 41776 TTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATTTTC 41835 ||| |||||||| || || || || ||||| || ||||||||||| | ||||||||||| Sbjct 81947 TTGATATTCACCAACTCGCTTCTCAAAAAAGTTTGTCTTTCCTTCGATCGATATATTTTC 82006 Query 41836 CATGAAATCAAACGGATTGGTAACATTATAAAttttt----------ttAAATCCCAATT 41885 ||| || ||||| |||||| | || ||| || | ||||| |||| Sbjct 82007 CATAAAGTCAAAAGGATTGTCAGAATGATACATCTAAACGAAAACGATTAAAAGAAAATT 82066 Query 41886 CAGAAA-----------------TCAAT-------CTATCTGCGATGAATTCTATATATG 41921 | ||| |||| || |||||||| ||||| || || Sbjct 82067 TACAAACCTTTTCATAACCAAGTTCAACTAGTAGCCTGTCTGCGATAAATTCAATGTACT 82126 Query 41922 TTTTCATCATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATT 41981 ||||| || ||||||||||| || | | ||||| ||||| | | | ||| | Sbjct 82127 GACACATCAGTTTGCAATTCATTCCAATTAAGCTGACTGGTAGAGCTTCTGATAAAAACT 82186 Query 41982 CTTGTTC-AATAGAGACCGCGTCTGTTATAATAGATCTTACTGTTTCTTCACTCGGTGG- 42039 ||||||| | |||| ||||| ||| |||| || || || |||||| || || Sbjct 82187 CTTGTTCTATTAGA-ACCGCCTCTCTTATTATTGACTCGACACGTTCTTC---CGAAGGC 82242 Query 42040 -ATACAATAA-ATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTA 42097 | |||| ||||||||| | | ||| |||||||| || || || || || |||||| Sbjct 82243 TTTTTGATAATATGTTTAAATAATAGACAAGCGAAATCACAATGTAGTCCTTCGTCTCTA 82302 Query 42098 CTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAAT 42157 || |||||||| ||| ||| | ||||| ||||| || || || || |||||||| ||| Sbjct 82303 CTGATTAATTCATTGCTAAAAGACAGTCCAGGCATAAGACCTCGTTTCTTAAGCCAGAAT 82362 Query 42158 ATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTC 42217 |||| || || |||||||| || | ||||| ||||| ||||| ||||| | | Sbjct 82363 ATAGCTGCGAAGCTACCAGAAAAAAAAACACCTTCCACTGCTGCAAAAGCAATTAAACGT 82422 Query 42218 TCTCCATAACCGGCACTGTCATGT---ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTT 42274 ||| || || | || || | ||||| | | ||||| | ||||| ||| Sbjct 82423 TCTGCAAAAGTAGATTTGGAATCTCCAATCCAATCTAATGCCCACTGAGCCTTTTTTGCA 82482 Query 42275 ACACAAGGCATCGTTTC-TATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAAC 42333 ||||||| | ||| | |||||| || |||||| ||| |||| || ||||| | Sbjct 82483 ACACAAGTTA-AGTTGCTTATGGCGTTGAAGAGAAAGTCCCTTTCTTTGGAGTCTTTGAT 82541 Query 42334 ATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAA 42393 |||||||| || || | | |||||||| || ||||| || || || || ||||| | Sbjct 82542 GTATGTATCAATTAATAAAGAGTACATTTCAGAGTGAATATTCTCGATAGCTATCTGCAT 82601 Query 42394 TCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATT 42453 ||| || || || | |||| | | ||| ||||| | || ||||| | || Sbjct 82602 TCCATAAAAGCAACGAACCTCTGGGATCTGGACTTCCTGGCTGAAGCGTTCTAGGAGGTT 82661 Query 42454 TTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTT 42513 ||| || ||||||||||| || ||||| || || || || | ||| |||| Sbjct 82662 CTCGAGTACAATTCCGTCACTCGCCGCAAAGAAAGCTAACACGTAGGATATGAAATGACG 82721 Query 42514 TTCGTCCGGTGTTAATTTA-TTCCAATCATTGATATCTTTAGATATATCTACTTCTTCTA 42572 ||| || || | | | ||||| ||| |||||| || | ||| || ||||| | Sbjct 82722 TTC-CCCAACCTTGAGCGACTCCCAATGTATGAGATCTTTGGACAAATCCACCTCTTCCA 82780 Query 42573 CCGTCCAAAATGATGCTTCTGCCTTTTTATACATATTCCAGATATCATGATATTGAATTG 42632 | |||||||| || ||| | ||||| ||||| | || ||||| ||| ||||||| || | Sbjct 82781 CAGTCCAAAAAGAAGCTACAGCCTTCTTATAAAAATGCCAGACATCGTGATATTCTATGG 82840 Query 42633 GGAAAATAACAAATCTATTTGGATTTGGT 42661 |||||| || || | | ||| |||||| Sbjct 82841 GGAAAAGGACGAAACGGTGTGGGTTTGGT 82869 >seq7458 Length=1001 Score = 114 bits (126), Expect = 2e-20 Identities = 138/186 (74%), Gaps = 4/186 (2%) Strand=Plus/Plus Query 72301 CCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCC 72360 || || ||||| || ||||||| || | ||| ||| ||| |||||||| || ||||| Sbjct 61 CCAATACCCCCGGCATTTTTAGATATAATTGCACATTCTTTCAACGTATCGTAAATGCCT 120 Query 72361 TCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACA--TTTGGTGACGACTAG 72418 ||||||||||| || |||| | | |||||||| || || | | |||| | || Sbjct 121 TCTATACTATCGTCTTTCATAGTGATAAGAAAACAACTTGAAAGCTGTGGTTTGG--GAG 178 Query 72419 TTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGT 72478 |||| || ||||| | || || ||||| || ||||||||||||||||||| || || | Sbjct 179 TTCCAGCGTTAAAAAGTGTCGGTGAAGCATGTGTAAACCATTTTTCAGACATCAGGTTAT 238 Query 72479 ACGTCT 72484 |||||| Sbjct 239 ACGTCT 244 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670888915413840