Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20haematobium_20[refseq_20GCF_5F000699445.1_202014-06- 09] 29,834 sequences; 375,894,156 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq2294 87.8 2e-12 seq523 84.2 2e-11 >seq2294 Length=11734 Score = 87.8 bits (96), Expect = 2e-12 Identities = 162/234 (69%), Gaps = 3/234 (1%) Strand=Plus/Minus Query 142952 ACATGGCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAA 143011 ||||| ||||| |||| |||| ||| | ||| | || || ||||| || |||||||| Sbjct 1573 ACATG-CCTCCACGTAGGCGCAGAACAAGATGTAAGGTTGACTCTTTCTGGATGTTGTAG 1515 Query 143012 TCGCTCATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATC 143070 || || || | || | ||||| | || |||||||| | |||| |||||| || || Sbjct 1514 TCAGACAGAGTACGTCCA-TCTTCCAACTGCTTACCAGCGAATATCAAACGTTGTTGGTC 1456 Query 143071 GGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGG 143130 ||||| || ||||||||||| |||||| ||| | | || | || || | || Sbjct 1455 AGGAGGAATACCTTCTTTGTCTTGAATTTTAGCTTTCACATTCTCAATAGTATCACTAGG 1396 Query 143131 TTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || || || | | | |||||| || | ||| || || || || |||||||| Sbjct 1395 CTCAACCTCTAACGGAATCGTCTTACCAGGCAACGTCTTCACAAAGATTTGCAT 1342 >seq523 Length=224339 Score = 84.2 bits (92), Expect = 2e-11 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | ||| | || | ||||| ||| ||||| || ||||| || || ||| Sbjct 140028 CCACCACGAAGACGGAGGACAAGATGAAGTGTTGATTCCTTCTGTATATTATAGTCGGAA 140087 Query 143018 ATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | || | || | ||||| |||||||| |||||| | || |||||||| || || || || Sbjct 140088 AGAGTTCGTCCA-TCTTCCAGTTGTTTGCCAGCAAAAATTAGACGTTGTTGGTCTGGTGG 140146 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTG-TTCCACCGTGTCCGTGGGTTCTA 143135 ||||||||||| || | | |||| | ||| ||| ||| | || || | || || | Sbjct 140147 GATGCCTTCTTTATC-TTGAATTTTCGCCTTAACTGCTTCTATTGTATCAGCAGGCTCAA 140205 Query 143136 CTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||| | || | || || || || | ||| || || || || ||||| Sbjct 140206 CTTCTAGGGTTATAGTTTTTCCCGTAAGTGTCTTCACAAAAATCTGCAT 140254 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506825321654880