Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20haematobium_20[refseq_20GCF_5F000699445.1_202014-06- 09] 29,834 sequences; 375,894,156 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq1010 136 6e-27 seq15752 102 1e-16 seq165 84.2 3e-11 >seq1010 Length=92424 Score = 136 bits (150), Expect = 6e-27 Identities = 507/776 (65%), Gaps = 34/776 (4%) Strand=Plus/Minus Query 124994 CCTGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTT 125053 ||| || ||||| ||||| || | ||| | | || || |||||| || || || Sbjct 82848 CCTTTTCCCCATAGAATATCACGATGTCTGGCATTTTTATAAGAAGGCTGTAGCTTCTTT 82789 Query 125054 TTGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTG-TACGATTGGGAGACTCGTTTGA 125112 |||||| || |||||||| ||| ||||||| || || ||| |||||||| ||| Sbjct 82788 TTGGACTGTGGAAGAGGTGGATTTGTCCAAAGATCTCATAC-ATTGGGAG--TCG----- 82737 Query 125113 CTGAAACT----GAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGAT 125168 || || | || || | || ||||| || | || || |||||||| | || Sbjct 82736 CTCAAGGTTGGGGAACGTCATTTCATATCCTACGTGTTAGCTTTCTTTGCGGCGAGTGAC 82677 Query 125169 GGAATCGTCAACGACAATCTGTTGACACGATTCTCTCAAGAGTTGACCATTCCAGAGGTG 125228 ||||| || ||| || || | ||| ||| || || | || |||||||| Sbjct 82676 GGAATTGTACTCGAGAACCTCCTAGAACGCTTCAGCCAGGAAGTCCAGATCCCAGAGGT- 82618 Query 125229 TCGT-GCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTAC 125287 |||| ||||||| ||| | || || || ||||| | ||||| |||||||||||| Sbjct 82617 TCGTTGCTTTTATGGAATGCAGATAGCTATCGAGAATATTCACTCTGAAATGTACTCTTT 82558 Query 125288 ACTGATTGACATGTACATTCGCGATCCGCAACGTAAAC-ACATGCTCTTTAACGCAATCG 125346 | | ||||| | ||||| || | ||| | || || | ||||| ||||| || Sbjct 82557 ATTAATTGATACATACATCAAAGACTC-CAAAGAAAGGGACTTTCTCTTCAACGCCATAA 82499 Query 125347 ACACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGT-GGATCGATGACGAC 125405 || | | | | | ||||||||||| |||| ||| | | |||| | || | Sbjct 82498 GCAACTTAACTTGTGTTGCAAAAAAGGCTCAGTGGGC-ATTAGATTGGATTGGAGATTCC 82440 Query 125406 AAGTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCG 125465 || ||| | | || || | | | || || || || || || || | || ||||| Sbjct 82439 AAATCTACTTTTGCAGAACGTTTAATTGCTTTTGCAGCAGTGGAAGGTGTTTTTTTTTCT 82380 Query 125466 GGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCAC 125525 ||||| || || || || || ||||| ||||| || || || ||||| |||||| | Sbjct 82379 GGTAGCTTCGCAGCTATATTCTGGCTTAAGAAACGAGGTCTTATGCCTGGACTGTCTTTT 82320 Query 125526 AGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTT 125585 || || || || || | ||||||| || ||||| ||||| || || |||| | ||| Sbjct 82319 AGCAATGAATTAATCAGTAGAGACGAAGGACTACATTGTGATTTCGCTTGTCTATTATTT 82260 Query 125586 CGCAACTATCTGCGTCCCGAGTGCAGATCCAGCG-ATGAAAAGGTCA--TCAACATTGTA 125642 ||| || | | | | | | || || | ||| ||| |||| | | | Sbjct 82259 A--AAC-ATAT---TATCAA----AAAGCCTTCGGAAGAACGTGTCGAGTCAATAAT--A 82212 Query 125643 ACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATT 125702 | || || || ||||||||||||||| || | ||| | ||||| |||||| | ||| Sbjct 82211 AGAGAGGCGGTTCTAATAGAACAAGAGTTTTTATCAGAAGCTCTACCAGTCAGCTTAATT 82152 Query 125703 GGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACT 125758 || ||||| ||||| || ||||| ||||||| || ||| | ||||| | ||||| Sbjct 82151 GGAATGAATTGCAAACTGATGTGTCAGTACATTGAATTTATCGCAGACAGGCTACT 82096 >seq15752 Length=398 Score = 102 bits (112), Expect = 1e-16 Identities = 138/190 (73%), Gaps = 2/190 (1%) Strand=Plus/Plus Query 96851 CAAT-GCAATGTCACGATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCG 96909 |||| ||| || ||||||| ||| || || || || || || ||||| || | ||| Sbjct 30 CAATAGCACTG-CACGATATGTTGACCAAGGAGGTAACAAGCGTCCAGGAGCCTTTGCCA 88 Query 96910 TCTACTTGGAACCTTGGCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTG 96969 | ||||| |||||||||||| | || || ||| | || || || ||||| ||||| ||| Sbjct 89 TGTACTTAGAACCTTGGCACCCTGATGTATTTCAGTTCATAGAAATGCGGAAAAATACTG 148 Query 96970 GCTTTGAAGAGGCACGAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCA 97029 || |||||| || || |||||||||| | ||| |||||| | || || ||||| | Sbjct 149 GCGCCGAAGAGATTCGTGCACGGGACTTGTTCTTTGCCCTCTGGATACCTGACTTGTTTA 208 Query 97030 TGAAGCGCGT 97039 || ||||| Sbjct 209 TGCGCCGCGT 218 >seq165 Length=488026 Score = 84.2 bits (92), Expect = 3e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 70339 GGGCCTCGGTGTACCCTTTAACATTGCAAGCTATTCTATGTTGACGCACATGATTGCTCA 70398 ||| || |||||||| || || |||||||| ||| || | || || | ||||||||||| Sbjct 487790 GGGTCTTGGTGTACCGTTCAATATTGCAAGTTATGCTTTATTAACATATATGATTGCTCA 487731 Query 70399 CATTACCGGCCTGAAAGCGCACGAGTTCGTACACACCATTGGCGACGCTCACGTGTATTT 70458 ||||| || | ||| | |||||||| ||||| |||||||| || || | |||| Sbjct 487730 TATTACTGGTTTAAAACCTGGTGAGTTCGTTCACACAATTGGCGATGCGCATATTTATTC 487671 Query 70459 AAATCA 70464 ||| || Sbjct 487670 AAACCA 487665 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740782840497840