Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20haematobium_20[refseq_20GCF_5F000699445.1_202014-06- 09] 29,834 sequences; 375,894,156 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq2294 122 6e-23 seq523 107 1e-18 seq26094 105 5e-18 seq1104 104 2e-17 seq52 93.3 3e-14 >seq2294 Length=11734 Score = 122 bits (134), Expect = 6e-23 Identities = 155/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| | ||| | ||| || ||||| || |||||||| || ||| | | | ||||| Sbjct 1551 AACAAGATGTAAGGTTGACTCTTTCTGGATGTTGTAGTCAGACAGAGTACGTCCATCTTC 1492 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 || || || |||||| ||||||||||||||||||| ||||| ||||||||||| Sbjct 1491 CAACTGCTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTGTCTTG 1432 Query 15274 AATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTT 15332 |||||| ||| || ||| | || || ||||| ||| || || ||||| | ||| || | Sbjct 1431 AATTTTAGCT-TTCACATTCTCAATAGTATCACTAGGCTCAACCTCTAACGGAATCGTCT 1373 Query 15333 TACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 |||| | || || || ||||| |||||||| Sbjct 1372 TACCAGGCAACGTCTTCACAAAGATTTGCAT 1342 Score = 91.5 bits (100), Expect = 1e-13 Identities = 111/149 (74%), Gaps = 2/149 (1%) Strand=Plus/Minus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 ||| || || || ||||| || |||||||| || ||| | | | ||||| || || Sbjct 1317 ATGCAGAGTCGACTCTTTCTGGATGTTGTAGTCAGACAGAGTACGTCCATCTTCCAACTG 1258 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT 15279 || |||||| ||||||||||||||||||| ||||| ||||||||||| |||||| Sbjct 1257 CTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTGTCTTGAATTTT 1198 Query 15280 -GCTCTTTACAATTTCTATGGTATCGCTA 15307 ||| || ||| | || || ||||| ||| Sbjct 1197 AGCT-TTCACATTCTCAATAGTATCACTA 1170 >seq523 Length=224339 Score = 107 bits (118), Expect = 1e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 |||||| || || || || ||||| || || ||| ||| ||| | ||||| | ||| Sbjct 140051 ATGAAGTGTTGATTCCTTCTGTATATTATAGTCGGAAAGAGTTCGTCCATCTTCCAGTTG 140110 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT 15279 ||||||||| | || | |||||||||||| ||| || |||||||| || |||||| Sbjct 140111 TTTGCCAGCAAAAATTAGACGTTGTTGGTCTGGTGGGATGCCTTCTTTATCTTGAATTTT 140170 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 ||| || |||||| ||||| | || || |||| ||| || ||||| || || Sbjct 140171 CGCCTTAACTGCTTCTATTGTATCAGCAGGCTCAACTTCTAGGGTTATAGTTTTTCCCGT 140230 Query 15340 CAGAGTTTTTACAAAAATTTGCAT 15363 || || || |||||||| ||||| Sbjct 140231 AAGTGTCTTCACAAAAATCTGCAT 140254 >seq26094 Length=224 Score = 105 bits (116), Expect = 5e-18 Identities = 153/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCG--CGT 15209 || || || ||||| ||||| ||||| || || |||||||| | ||| || | | Sbjct 212 AACACCAAGTGAAGAGTGGACTCTTTCTGGATATTGTAATCAG--ACAATGTACGACCAT 155 Query 15210 CTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGT 15269 |||| | || || ||||| | |||| ||| || |||||| ||||||||||||||| | Sbjct 154 CTTCCAGCTGCTTCCCAGCAAAGATCAGACGCTGCTGGTCGGGTGGAATTCCTTCTTTAT 95 Query 15270 CACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGG 15329 | ||| || ||| ||| | || ||||| || || ||| || || || || || | Sbjct 94 CTTGAATCTTAGCCTTCACATTCTCAATGGTGTCACTCGGTTCGACTTCCAAAGTGATCG 35 Query 15330 TTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 ||||||| |||| || || |||||||| ||||| Sbjct 34 TTTTACCAGTCAATGTCTTCACAAAAATCTGCAT 1 >seq1104 Length=79538 Score = 104 bits (114), Expect = 2e-17 Identities = 153/215 (71%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCG--CGT 15209 || || || ||||| ||||| ||||| || || |||||||| | ||| || | | Sbjct 62162 AACACCAAGTGAAGAGTGGACTCTTTCTGGATATTGTAATCAG--ACAATGTACGACCAT 62105 Query 15210 CTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGT 15269 |||| | || || ||||| | |||| ||| ||||| ||| ||| ||||||||||| | Sbjct 62104 CTTCCAGCTGCTTCCCAGCAAAGATCAGACGCTGTTGATCGGGTGGGATTCCTTCTTTAT 62045 Query 15270 CACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGG 15329 | ||| || ||| ||| | || ||||| || || ||| || || || || || | Sbjct 62044 CTTGAATCTTAGCCTTCACATTCTCAATGGTGTCACTCGGTTCGACTTCCAAAGTGATCG 61985 Query 15330 TTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 ||||||| |||| || || |||||||| |||||| Sbjct 61984 TTTTACCAGTCAATGTCTTCACAAAAATCTGCATA 61950 Score = 104 bits (114), Expect = 2e-17 Identities = 153/215 (71%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCG--CGT 15209 || || || ||||| ||||| ||||| || || |||||||| | ||| || | | Sbjct 62390 AACACCAAGTGAAGAGTGGACTCTTTCTGGATATTGTAATCAG--ACAATGTACGACCAT 62333 Query 15210 CTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGT 15269 |||| | || || ||||| | |||| ||| ||||| ||| ||| ||||||||||| | Sbjct 62332 CTTCCAGCTGCTTCCCAGCAAAGATCAGACGCTGTTGATCGGGTGGGATTCCTTCTTTAT 62273 Query 15270 CACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGG 15329 | ||| || ||| ||| | || ||||| || || ||| || || || || || | Sbjct 62272 CTTGAATCTTAGCCTTCACATTCTCAATGGTGTCACTCGGTTCGACTTCCAAAGTGATCG 62213 Query 15330 TTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 ||||||| |||| || || |||||||| |||||| Sbjct 62212 TTTTACCAGTCAATGTCTTCACAAAAATCTGCATA 62178 Score = 100 bits (110), Expect = 2e-16 Identities = 165/235 (70%), Gaps = 6/235 (3%) Strand=Plus/Minus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCG--CGT 15209 || || || ||||| ||||| ||||| || || |||||||| | ||| || | | Sbjct 61706 AACACCAAGTGAAGAGTGGACTCTTTCTGGATATTGTAATCAG--ACAATGTACGACCAT 61649 Query 15210 CTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGT 15269 |||| | || || ||||| | |||| ||| ||||| ||| ||| ||||||||||| | Sbjct 61648 CTTCCAGCTGCTTCCCAGCAAAGATCAGACGCTGTTGATCGGGTGGGATTCCTTCTTTAT 61589 Query 15270 CACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGG 15329 | || || ||| ||| | || ||||| || || ||| || || || || || | Sbjct 61588 CTTGGATCTTAGCCTTCACATTCTCAATGGTGTCACTCGGTTCGACTTCCAAAGTGATCG 61529 Query 15330 TTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGAAAATAAAATTTTAAT 15384 ||||||| |||| || || |||||||| ||| || | ||||| || ||| ||| Sbjct 61528 TTTTACCAGTCAATGTCTTCACAAAAATCTGC--ATCTCAAAATCAAGTTTAAAT 61476 Score = 98.7 bits (108), Expect = 7e-16 Identities = 152/215 (71%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCG--CGT 15209 || || || ||||| ||||| ||||| || || |||||||| | ||| || | | Sbjct 61934 AACACCAAGTGAAGAGTGGACTCTTTCTGGATATTGTAATCAG--ACAATGTACGACCAT 61877 Query 15210 CTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGT 15269 |||| | || || ||||| | |||| ||| ||||| ||| ||| ||||||||||| | Sbjct 61876 CTTCCAGCTGCTTCCCAGCAAAGATCAGACGCTGTTGATCGGGTGGGATTCCTTCTTTAT 61817 Query 15270 CACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGG 15329 | || || ||| ||| | || ||||| || || ||| || || || || || | Sbjct 61816 CTTGGATCTTAGCCTTCACATTCTCAATGGTGTCACTCGGTTCGACTTCCAAAGTGATCG 61757 Query 15330 TTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 ||||||| |||| || || |||||||| |||||| Sbjct 61756 TTTTACCAGTCAATGTCTTCACAAAAATCTGCATA 61722 >seq52 Length=730220 Score = 93.3 bits (102), Expect = 3e-14 Identities = 115/155 (74%), Gaps = 2/155 (1%) Strand=Plus/Minus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| | ||| | ||| || ||||| || |||||||| || ||| | | | ||||| Sbjct 729717 AACAAGATGTAAGGTTGACTCTTTCTGGATGTTGTAGTCAGACAGAGTACGTCCATCTTC 729658 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 || || || |||||| ||||||||||||||||||| ||||| ||||||||||| Sbjct 729657 CAACTGCTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTGTCTTG 729598 Query 15274 AATTTT-GCTCTTTACAATTTCTATGGTATCGCTA 15307 |||||| ||| || ||| | || || ||||| ||| Sbjct 729597 AATTTTAGCT-TTCACATTCTCAATAGTATCACTA 729564 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362047510963794