Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20haematobium_20[refseq_20GCF_5F000699445.1_202014-06- 09] 29,834 sequences; 375,894,156 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq26094 105 4e-18 seq1104 96.9 2e-15 seq523 95.1 8e-15 >seq26094 Length=224 Score = 105 bits (116), Expect = 4e-18 Identities = 155/218 (71%), Gaps = 6/218 (3%) Strand=Plus/Minus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 ||||||||||| || | || |||||||| || ||||||||||||||||| | | Sbjct 215 CGCAACACCAAGTGAAGAGTGGACTCTTTCTGGATATTGTAATCAGACAATGTACGACCA 156 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274 || |||| ||||| ||| ||| || | ||| |||||||| | || || |||||||| Sbjct 155 TCTTCCAGCTGCTTCCCAGCAAAGATCAGACGCTGCTGGTCGGGTGGAATTCCTTCTTTA 96 Query 33275 TCGCTAATC---GCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTT 33331 || |||| ||| || || | | ||| ||||| | |||| || |||| ||| Sbjct 95 TCTTGAATCTTAGCC---TTCACATTCTCAATGGTGTCACTCGGTTCGACTTCCAAAGTG 39 Query 33332 ATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 |||||||| || || | || || || ||||| ||||| Sbjct 38 ATCGTTTTACCAGTCAATGTCTTCACAAAAATCTGCAT 1 >seq1104 Length=79538 Score = 96.9 bits (106), Expect = 2e-15 Identities = 153/218 (70%), Gaps = 6/218 (3%) Strand=Plus/Minus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 ||||||||||| || | || |||||||| || ||||||||||||||||| | | Sbjct 62165 CGCAACACCAAGTGAAGAGTGGACTCTTTCTGGATATTGTAATCAGACAATGTACGACCA 62106 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274 || |||| ||||| ||| ||| || | ||| || || || | || || |||||||| Sbjct 62105 TCTTCCAGCTGCTTCCCAGCAAAGATCAGACGCTGTTGATCGGGTGGGATTCCTTCTTTA 62046 Query 33275 TCGCTAATC---GCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTT 33331 || |||| ||| || || | | ||| ||||| | |||| || |||| ||| Sbjct 62045 TCTTGAATCTTAGCC---TTCACATTCTCAATGGTGTCACTCGGTTCGACTTCCAAAGTG 61989 Query 33332 ATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 |||||||| || || | || || || ||||| ||||| Sbjct 61988 ATCGTTTTACCAGTCAATGTCTTCACAAAAATCTGCAT 61951 Score = 96.9 bits (106), Expect = 2e-15 Identities = 153/218 (70%), Gaps = 6/218 (3%) Strand=Plus/Minus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 ||||||||||| || | || |||||||| || ||||||||||||||||| | | Sbjct 62393 CGCAACACCAAGTGAAGAGTGGACTCTTTCTGGATATTGTAATCAGACAATGTACGACCA 62334 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274 || |||| ||||| ||| ||| || | ||| || || || | || || |||||||| Sbjct 62333 TCTTCCAGCTGCTTCCCAGCAAAGATCAGACGCTGTTGATCGGGTGGGATTCCTTCTTTA 62274 Query 33275 TCGCTAATC---GCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTT 33331 || |||| ||| || || | | ||| ||||| | |||| || |||| ||| Sbjct 62273 TCTTGAATCTTAGCC---TTCACATTCTCAATGGTGTCACTCGGTTCGACTTCCAAAGTG 62217 Query 33332 ATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 |||||||| || || | || || || ||||| ||||| Sbjct 62216 ATCGTTTTACCAGTCAATGTCTTCACAAAAATCTGCAT 62179 Score = 93.3 bits (102), Expect = 3e-14 Identities = 152/218 (70%), Gaps = 6/218 (3%) Strand=Plus/Minus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 ||||||||||| || | || |||||||| || ||||||||||||||||| | | Sbjct 61709 CGCAACACCAAGTGAAGAGTGGACTCTTTCTGGATATTGTAATCAGACAATGTACGACCA 61650 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTT- 33273 || |||| ||||| ||| ||| || | ||| || || || | || || |||||||| Sbjct 61649 TCTTCCAGCTGCTTCCCAGCAAAGATCAGACGCTGTTGATCGGGTGGGATTCCTTCTTTA 61590 Query 33274 --TTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTT 33331 || | | | ||| || || | | ||| ||||| | |||| || |||| ||| Sbjct 61589 TCTTGGATCTTAGCC---TTCACATTCTCAATGGTGTCACTCGGTTCGACTTCCAAAGTG 61533 Query 33332 ATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 |||||||| || || | || || || ||||| ||||| Sbjct 61532 ATCGTTTTACCAGTCAATGTCTTCACAAAAATCTGCAT 61495 Score = 93.3 bits (102), Expect = 3e-14 Identities = 152/218 (70%), Gaps = 6/218 (3%) Strand=Plus/Minus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 ||||||||||| || | || |||||||| || ||||||||||||||||| | | Sbjct 61937 CGCAACACCAAGTGAAGAGTGGACTCTTTCTGGATATTGTAATCAGACAATGTACGACCA 61878 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTT- 33273 || |||| ||||| ||| ||| || | ||| || || || | || || |||||||| Sbjct 61877 TCTTCCAGCTGCTTCCCAGCAAAGATCAGACGCTGTTGATCGGGTGGGATTCCTTCTTTA 61818 Query 33274 --TTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTT 33331 || | | | ||| || || | | ||| ||||| | |||| || |||| ||| Sbjct 61817 TCTTGGATCTTAGCC---TTCACATTCTCAATGGTGTCACTCGGTTCGACTTCCAAAGTG 61761 Query 33332 ATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 |||||||| || || | || || || ||||| ||||| Sbjct 61760 ATCGTTTTACCAGTCAATGTCTTCACAAAAATCTGCAT 61723 >seq523 Length=224339 Score = 95.1 bits (104), Expect = 8e-15 Identities = 146/207 (71%), Gaps = 6/207 (3%) Strand=Plus/Plus Query 33166 ATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCCAATTG 33225 ||| | ||| || || || |||||||| || || || | | | || || |||| ||| Sbjct 140051 ATGAAGTGTTGATTCCTTCTGTATATTATAGTCGGAAAGAGTTCGTCCATCTTCCAGTTG 140110 Query 33226 CTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTAA---T 33282 || ||| ||| |||| |||||| ||||| | || ||||||||||| || || | Sbjct 140111 TTTGCCAGCAAAAATTAGACGTTGTTGGTCTGGTGGGATGCCTTCTTTATCTTGAATTTT 140170 Query 33283 CGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTTCC 33342 |||| || |||| || || || || || | ||| || || ||||| |||||||| Sbjct 140171 CGCC---TTAACTGCTTCTATTGTATCAGCAGGCTCAACTTCTAGGGTTATAGTTTTTCC 140227 Query 33343 CGTAAGAGTTTTTACGAAAATTTGCAT 33369 |||||| || || || ||||| ||||| Sbjct 140228 CGTAAGTGTCTTCACAAAAATCTGCAT 140254 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318661691866932