Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20haematobium_20[refseq_20GCF_5F000699445.1_202014-06- 09] 29,834 sequences; 375,894,156 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq2294 104 2e-17 seq26094 98.7 7e-16 seq1104 89.7 4e-13 >seq2294 Length=11734 Score = 104 bits (114), Expect = 2e-17 Identities = 117/157 (75%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 43965 CATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTT 44024 |||| ||||| || || || || |||||||| ||||| ||||| |||| | |||||||| Sbjct 1498 CATCTTCCAACTGCTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGAATACCTTCTT 1439 Query 44025 TATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAA 44084 | ||| |||||| ||| || | ||| |||||| ||||| || || | || || Sbjct 1438 TGTCTTGAATTTTAGCTTTCACATTCTCAATAGTATCACTAGGCTCAACCTCTAACGGAA 1379 Query 44085 TTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 | || ||||| | || ||||||||||| |||||||| Sbjct 1378 TCGTCTTACCAGGCAACGTCTTCACAAAGATTTGCAT 1342 >seq26094 Length=224 Score = 98.7 bits (108), Expect = 7e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 43910 AACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCG 43969 |||||||| || || ||| |||||| || ||||| ||||| ||| ||| |||| Sbjct 212 AACACCAAGTGAAGAGTGGACTCTTTCTGGATATTGTAATCAGACAATGTACGACCATCT 153 Query 43970 TCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCT 44029 |||| || || || ||||| |||| || |||||||| | || | |||||||||||| Sbjct 152 TCCAGCTGCTTCCCAGCAAAGATCAGACGCTGCTGGTCGGGTGGAATTCCTTCTTTATCT 93 Query 44030 GAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTT 44089 ||| || || || | ||| || || ||| || || || | || || ||| Sbjct 92 TGAATCTTAGCCTTCACATTCTCAATGGTGTCACTCGGTTCGACTTCCAAAGTGATCGTT 33 Query 44090 TTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 ||||| || || ||||||||||| || ||||| Sbjct 32 TTACCAGTCAATGTCTTCACAAAAATCTGCAT 1 >seq1104 Length=79538 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 43910 AACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCG 43969 |||||||| || || ||| |||||| || ||||| ||||| ||| ||| |||| Sbjct 62162 AACACCAAGTGAAGAGTGGACTCTTTCTGGATATTGTAATCAGACAATGTACGACCATCT 62103 Query 43970 TCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCT 44029 |||| || || || ||||| |||| || || || || | || | |||||||||||| Sbjct 62102 TCCAGCTGCTTCCCAGCAAAGATCAGACGCTGTTGATCGGGTGGGATTCCTTCTTTATCT 62043 Query 44030 GAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTT 44089 ||| || || || | ||| || || ||| || || || | || || ||| Sbjct 62042 TGAATCTTAGCCTTCACATTCTCAATGGTGTCACTCGGTTCGACTTCCAAAGTGATCGTT 61983 Query 44090 TTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 ||||| || || ||||||||||| || ||||| Sbjct 61982 TTACCAGTCAATGTCTTCACAAAAATCTGCAT 61951 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 43910 AACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCG 43969 |||||||| || || ||| |||||| || ||||| ||||| ||| ||| |||| Sbjct 62390 AACACCAAGTGAAGAGTGGACTCTTTCTGGATATTGTAATCAGACAATGTACGACCATCT 62331 Query 43970 TCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCT 44029 |||| || || || ||||| |||| || || || || | || | |||||||||||| Sbjct 62330 TCCAGCTGCTTCCCAGCAAAGATCAGACGCTGTTGATCGGGTGGGATTCCTTCTTTATCT 62271 Query 44030 GAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTT 44089 ||| || || || | ||| || || ||| || || || | || || ||| Sbjct 62270 TGAATCTTAGCCTTCACATTCTCAATGGTGTCACTCGGTTCGACTTCCAAAGTGATCGTT 62211 Query 44090 TTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 ||||| || || ||||||||||| || ||||| Sbjct 62210 TTACCAGTCAATGTCTTCACAAAAATCTGCAT 62179 Score = 86.0 bits (94), Expect = 4e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 43910 AACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCG 43969 |||||||| || || ||| |||||| || ||||| ||||| ||| ||| |||| Sbjct 61706 AACACCAAGTGAAGAGTGGACTCTTTCTGGATATTGTAATCAGACAATGTACGACCATCT 61647 Query 43970 TCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCT 44029 |||| || || || ||||| |||| || || || || | || | |||||||||||| Sbjct 61646 TCCAGCTGCTTCCCAGCAAAGATCAGACGCTGTTGATCGGGTGGGATTCCTTCTTTATCT 61587 Query 44030 GAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTT 44089 || || || || | ||| || || ||| || || || | || || ||| Sbjct 61586 TGGATCTTAGCCTTCACATTCTCAATGGTGTCACTCGGTTCGACTTCCAAAGTGATCGTT 61527 Query 44090 TTACCGGTTAAAGTCTTCACAAATATTTGCATGTC 44124 ||||| || || ||||||||||| || ||||| || Sbjct 61526 TTACCAGTCAATGTCTTCACAAAAATCTGCATCTC 61492 Score = 86.0 bits (94), Expect = 4e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 43910 AACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCG 43969 |||||||| || || ||| |||||| || ||||| ||||| ||| ||| |||| Sbjct 61934 AACACCAAGTGAAGAGTGGACTCTTTCTGGATATTGTAATCAGACAATGTACGACCATCT 61875 Query 43970 TCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCT 44029 |||| || || || ||||| |||| || || || || | || | |||||||||||| Sbjct 61874 TCCAGCTGCTTCCCAGCAAAGATCAGACGCTGTTGATCGGGTGGGATTCCTTCTTTATCT 61815 Query 44030 GAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTT 44089 || || || || | ||| || || ||| || || || | || || ||| Sbjct 61814 TGGATCTTAGCCTTCACATTCTCAATGGTGTCACTCGGTTCGACTTCCAAAGTGATCGTT 61755 Query 44090 TTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 ||||| || || ||||||||||| || ||||| Sbjct 61754 TTACCAGTCAATGTCTTCACAAAAATCTGCAT 61723 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354648602199432