Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20haematobium_20[refseq_20GCF_5F000699445.1_202014-06- 09] 29,834 sequences; 375,894,156 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq1010 260 1e-64 >seq1010 Length=92424 Score = 260 bits (288), Expect = 1e-64 Identities = 603/904 (67%), Gaps = 46/904 (5%) Strand=Plus/Plus Query 12862 TTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTTTC 12921 ||||||||| | ||||| || |||||||||||||| |||||||| | ||| |||||||| Sbjct 81947 TTGATATTCACCAACTCGCTTCTCAAAAAAGTTTGTCTTTCCTTCGATCGATATATTTTC 82006 Query 12922 CATAAAATCGAAAGGATTTTTCGAACAATAGT-------------------------ATT 12956 |||||| || |||||||| | ||| ||| ||| Sbjct 82007 CATAAAGTCAAAAGGATTGTCAGAATGATACATCTAAACGAAAACGATTAAAAGAAAATT 82066 Query 12957 T---------TTTACACCCTAATTCTAGTAACAATCTGTCAGCAACAAACTCTATGTACT 13007 | || | | || | ||| | || | ||||| || | ||| || ||||||| Sbjct 82067 TACAAACCTTTTCATAACCAAGTTCAACTAGTAGCCTGTCTGCGATAAATTCAATGTACT 82126 Query 13008 GTTTCATTAAATCACAGTTCATTCCTATTAATTTTACAGGCATAGCTTCTGTTAAAAAGt 13067 | ||| | | || |||||||| ||||| | || || | |||||||| |||||| | Sbjct 82127 GACACATCAGTTTGCAATTCATTCCAATTAAGCTGACTGGTAGAGCTTCTGATAAAAACT 82186 Query 13068 ttttttCTATATCAACTGCTTCGATAACTATGTCTCTTATTACGTTCT-CTAATGGAGGA 13126 || |||||| ||| || || | | ||| | || ||||||| | | || Sbjct 82187 CTTGTTCTATTAGAACCGCCTCTCTTATTAT-TGACTCGACACGTTCTTCCGAAGGCTT- 82244 Query 13127 TTTGATAG-ATGCTTAAACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACT 13185 ||||||| ||| ||||| | | ||| || |||||||| || | |||||| |||||||| Sbjct 82245 TTTGATAATATGTTTAAATAATAGACAAGCGAAATCACAATGTAGTCCTTCGTCTCTACT 82304 Query 13186 TATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATAT 13245 |||| || || ||| | || || |||||||| |||||||| |||| ||| ||||| Sbjct 82305 GATTAATTCATTGCTAAAAGACAGTCCAGGCATAAGACCTCGTTTCTTAAGCCAGAATAT 82364 Query 13246 AGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTC 13305 ||| || || ||| |||||||| | ||||| ||||||||||| || || || | ||| Sbjct 82365 AGCTGCGAAGCTACCAGAAAAAAAAACACCTTCCACTGCTGCAAAAGCAATTAAACGTTC 82424 Query 13306 ACCATACGTACTATTTTTACTCT-CTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAA 13364 || | ||| |||| | ||| | ||||| | | ||||| | || |||| | || Sbjct 82425 TGCAAAAGTA-GATTTGGAATCTCCAATCCAATCTAATGCCCACTGAGCCTTTTTTGCAA 82483 Query 13365 CGCAGTTCATATTTTCTATTGCGTTAAATAAATAAtttttttCCTTACTGTCTAAAATAT 13424 | || | | || ||| ||||| || | | | | |||| || |||| || | Sbjct 82484 CACAAGTTAAGTTGCTTATGGCGTTGAAGAGAAAGTCCCTTTCTTTGGAGTCTTTGATGT 82543 Query 13425 AAGTATCTATCAATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAAC 13484 | ||||| || ||||| |||||||| || |||||||| || || ||||| || | | Sbjct 82544 ATGTATCAATTAATAAAGAGTACATTTCAGAGTGAATATTCTCGATAGCTATCTGCATTC 82603 Query 13485 CATAAAAACATCTAGCCTCTGATACCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTT 13544 ||||||| || | | |||||| | ||| ||||| | || | |||| | ||| | Sbjct 82604 CATAAAAGCAACGAACCTCTGGGATCTGGACTTCCTGGCTGAAGCGTTCTAGGAGGTTCT 82663 Query 13545 CGTTAACTATCCCGTCACTAGCAGCaaaaaaaGCAAGTATGT-GCTTAATAAAttttttt 13603 || || || |||||||| || ||||| ||||| | | || | || |||| || Sbjct 82664 CGAGTACAATTCCGTCACTCGCCGCAAAGAAAGCTAACACGTAGGATATGAAATGACGTT 82723 Query 13604 tCGTTTTC-TGA-CAACTTTAACCAATCTGGAAAATCTTTTGATAAATCTACCTCCTCAA 13661 | | ||| | ||| ||||| | | |||||| || ||||| ||||| || | Sbjct 82724 CCCCAACCTTGAGCGACT---CCCAATGTATGAGATCTTTGGACAAATCCACCTCTTCCA 82780 Query 13662 CGGTCCAAAAAGAAGCAACAGCCTTCTTATACATCATCCATATATCCTTATAAACAATGG 13721 | |||||||||||||| |||||||||||||| | ||| | ||| | ||| | |||| Sbjct 82781 CAGTCCAAAAAGAAGCTACAGCCTTCTTATAAAAATGCCAGACATCGTGATATTCTATGG 82840 Query 13722 GAAA 13725 | || Sbjct 82841 GGAA 82844 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430825693991268