Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20haematobium_20[refseq_20GCF_5F000699445.1_202014-06- 09] 29,834 sequences; 375,894,156 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq523 176 1e-38 seq1104 152 1e-31 seq26094 143 6e-29 >seq523 Length=224339 Score = 176 bits (194), Expect = 1e-38 Identities = 166/212 (78%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || ||||| | ||| ||||| ||||| ||||||||||| || ||||||| || ||| Sbjct 140043 AGGACAAGATGAAGTGTTGATTCCTTCTGTATATTATAGTCGGAAAGAGTTCGTCCATCT 140102 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || |||||||| |||||||||||||| | ||||| || || || || ||||||||||| Sbjct 140103 TCCAGTTGTTTGCCAGCAAAAATTAGACGTTGTTGGTCTGGTGGGATGCCTTCTTTATCT 140162 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 ||||| || || || || ||||| ||||| ||| || || ||||| || ||||| Sbjct 140163 TGAATTTTCGCCTTAACTGCTTCTATTGTATCAGCAGGCTCAACTTCTAGGGTTATAGTT 140222 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || |||||||| || ||||| |||||||| Sbjct 140223 TTTCCCGTAAGTGTCTTCACAAAAATCTGCAT 140254 >seq1104 Length=79538 Score = 152 bits (168), Expect = 1e-31 Identities = 152/197 (77%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || |||||||| ||||| || ||||| | || | ||| ||||| || || || ||| Sbjct 62147 GTGGACTCTTTCTGGATATTGTAATCAGACAATGTACGACCATCTTCCAGCTGCTTCCCA 62088 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || || | ||||||||| || || |||||||||||||| |||||||| || || Sbjct 62087 GCAAAGATCAGACGCTGTTGATCGGGTGGGATTCCTTCTTTATCTTGAATCTTAGCCTTC 62028 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | ||| || || ||||| || || | || || || |||||||| | ||| Sbjct 62027 ACATTCTCAATGGTGTCACTCGGTTCGACTTCCAAAGTGATCGTTTTACCAGTCAATGTC 61968 Query 104543 TTTACAAATATCTGCAT 104559 || ||||| |||||||| Sbjct 61967 TTCACAAAAATCTGCAT 61951 Score = 152 bits (168), Expect = 1e-31 Identities = 152/197 (77%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || |||||||| ||||| || ||||| | || | ||| ||||| || || || ||| Sbjct 62375 GTGGACTCTTTCTGGATATTGTAATCAGACAATGTACGACCATCTTCCAGCTGCTTCCCA 62316 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || || | ||||||||| || || |||||||||||||| |||||||| || || Sbjct 62315 GCAAAGATCAGACGCTGTTGATCGGGTGGGATTCCTTCTTTATCTTGAATCTTAGCCTTC 62256 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | ||| || || ||||| || || | || || || |||||||| | ||| Sbjct 62255 ACATTCTCAATGGTGTCACTCGGTTCGACTTCCAAAGTGATCGTTTTACCAGTCAATGTC 62196 Query 104543 TTTACAAATATCTGCAT 104559 || ||||| |||||||| Sbjct 62195 TTCACAAAAATCTGCAT 62179 Score = 149 bits (164), Expect = 1e-30 Identities = 151/197 (77%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || |||||||| ||||| || ||||| | || | ||| ||||| || || || ||| Sbjct 61691 GTGGACTCTTTCTGGATATTGTAATCAGACAATGTACGACCATCTTCCAGCTGCTTCCCA 61632 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || || | ||||||||| || || |||||||||||||| || ||||| || || Sbjct 61631 GCAAAGATCAGACGCTGTTGATCGGGTGGGATTCCTTCTTTATCTTGGATCTTAGCCTTC 61572 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | ||| || || ||||| || || | || || || |||||||| | ||| Sbjct 61571 ACATTCTCAATGGTGTCACTCGGTTCGACTTCCAAAGTGATCGTTTTACCAGTCAATGTC 61512 Query 104543 TTTACAAATATCTGCAT 104559 || ||||| |||||||| Sbjct 61511 TTCACAAAAATCTGCAT 61495 Score = 149 bits (164), Expect = 1e-30 Identities = 151/197 (77%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || |||||||| ||||| || ||||| | || | ||| ||||| || || || ||| Sbjct 61919 GTGGACTCTTTCTGGATATTGTAATCAGACAATGTACGACCATCTTCCAGCTGCTTCCCA 61860 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || || | ||||||||| || || |||||||||||||| || ||||| || || Sbjct 61859 GCAAAGATCAGACGCTGTTGATCGGGTGGGATTCCTTCTTTATCTTGGATCTTAGCCTTC 61800 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | ||| || || ||||| || || | || || || |||||||| | ||| Sbjct 61799 ACATTCTCAATGGTGTCACTCGGTTCGACTTCCAAAGTGATCGTTTTACCAGTCAATGTC 61740 Query 104543 TTTACAAATATCTGCAT 104559 || ||||| |||||||| Sbjct 61739 TTCACAAAAATCTGCAT 61723 >seq26094 Length=224 Score = 143 bits (158), Expect = 6e-29 Identities = 150/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || |||||||| ||||| || ||||| | || | ||| ||||| || || || ||| Sbjct 197 GTGGACTCTTTCTGGATATTGTAATCAGACAATGTACGACCATCTTCCAGCTGCTTCCCA 138 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || || | ||| || || || || |||||||||||||| |||||||| || || Sbjct 137 GCAAAGATCAGACGCTGCTGGTCGGGTGGAATTCCTTCTTTATCTTGAATCTTAGCCTTC 78 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | ||| || || ||||| || || | || || || |||||||| | ||| Sbjct 77 ACATTCTCAATGGTGTCACTCGGTTCGACTTCCAAAGTGATCGTTTTACCAGTCAATGTC 18 Query 104543 TTTACAAATATCTGCAT 104559 || ||||| |||||||| Sbjct 17 TTCACAAAAATCTGCAT 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1150958280120472