Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20haematobium_20[refseq_20GCF_5F000699445.1_202014-06- 09] 29,834 sequences; 375,894,156 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq40 95.1 1e-14 seq776 89.7 6e-13 seq1115 82.4 9e-11 >seq40 Length=808671 Score = 95.1 bits (104), Expect = 1e-14 Identities = 173/248 (70%), Gaps = 14/248 (6%) Strand=Plus/Plus Query 164531 TACATGGACCTCCTGGTTGCGGTAAAACATTAATGGCTCGATGCATTGCTCAA--GCTTT 164588 || |||| || |||||| ||||||||| ||||||| ||| |||| | || |||| Sbjct 18667 TATATGGTCCACCTGGTACTGGTAAAACACTAATGGCACGACAAATTGGTAAAATGCTT- 18725 Query 164589 TAAAT---CGCGACCCGTTAAAATTGTTAATGGTCCTGAATTATTGAACAAATATGTAGG 164645 ||| || || || ||||||||| |||||||| |||| | |||||||| || Sbjct 18726 --AATGCACGTGAACC--TAAAATTGTCAATGGTCCAAGTATATTAGATAAATATGTCGG 18781 Query 164646 TGAGTCAGAAGCTAATGTTAGAAAGTTGTTTCAGGAGGCTGAAGAAGAACAAAAGAAAGC 164705 ||| || ||||| ||| | | || || || || |||||||||||| ||| || || Sbjct 18782 TGAATCTGAAGCAAATATCCGTAAATTATTCGCTGATGCTGAAGAAGAAGAAA--AACGC 18839 Query 164706 A--GGTTTAGCTAGTAAATTACATGTTATTGTTTTTGATGAGATAGATGCTCTTTGCAAA 164763 | ||| | | ||| ||| ||||| | |||||||| || ||||| |||| ||| Sbjct 18840 ATGGGTGCAAAATCTGCATTGCATATTATTATATTTGATGAAATTGATGCCATTTGTAAA 18899 Query 164764 AAACGTGG 164771 |||||| Sbjct 18900 TCACGTGG 18907 >seq776 Length=136744 Score = 89.7 bits (98), Expect = 6e-13 Identities = 117/159 (74%), Gaps = 10/159 (6%) Strand=Plus/Minus Query 7225 TCACCTTCTTCACGATGATTAAATCCTAATCGATTTAAATTAGATTTT---GATCCATAA 7281 |||||||||| ||| | | ||||||||| || || |||| ||| ||||||| Sbjct 130840 TCACCTTCTTTACGCTCAGTAAATCCTAGTCCATCTAAAA---ATTCACGAGATCCATTT 130784 Query 7282 GCATCCCAAATATGTACAGAtttttttGATAAATTTAA--AGAATTTGTAGATCCTTTAA 7339 |||||||| | ||||||| || |||| | || | ||||||||||||||| || Sbjct 130783 GCATCCCAGAAATGTACA--TTCTTTTCCGCCAGTTCACGAGAATTTGTAGATCCACGAA 130726 Query 7340 GGAACCATAAAAGTTCTTCTACTATTCCACGCCAAAACA 7378 |||||||| ||||||||||| ||||| || |||||| Sbjct 130725 CAAACCATAATAGTTCTTCTACGATTCCGCGAAAAAACA 130687 >seq1115 Length=78361 Score = 82.4 bits (90), Expect = 9e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 19394 CAAAAAGGCACATGTGGTATGATTTATCGTCAAGAAGATATGCCTTTTACTAAAGATGGT 19453 || ||||| || ||||| || ||||||||||||||||||||| || || || || Sbjct 33486 CAGAAAGGTACTTGTGGAATTCGTTATCGTCAAGAAGATATGCCATTCACATGTGAAGGA 33545 Query 19454 ATAGTGCCGGATCTTATTATTAACCCACATGCTTTTCCAAGTCGAATGAC 19503 || || ||| |||||||||| ||||| ||| |||| ||||| ||||| Sbjct 33546 ATTACACCAGATATTATTATTAATCCACACGCTATTCCTAGTCGTATGAC 33595 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595649784434400