Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20haematobium_20[refseq_20GCF_5F000699445.1_202014-06- 09] 29,834 sequences; 375,894,156 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq26094 98.7 9e-16 seq1104 93.3 4e-14 >seq26094 Length=224 Score = 98.7 bits (108), Expect = 9e-16 Identities = 153/217 (71%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA- 94851 |||||||||||||| | ||| || || || || | || |||| | | | ||| || Sbjct 215 CGCAACACCAAGTGAAGAGTGGACTCTTTCTGGATATTGTAAT--CAGACAATGTACGAC 158 Query 94852 -ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTT 94910 ||| |||||||| || || ||||||| | | ||||| || || ||||| ||||||| Sbjct 157 CATCTTCCAGCTGCTTCCCAGCAAAGATCAGACGCTGCTGGTCGGGTGGAATTCCTTCTT 98 Query 94911 TGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGA 94970 | || | ||| || ||||| || | | |||||| | ||||| || | |||| Sbjct 97 TATCTTGAATCTTAGCCTTCACATTCTCAATGGTGTCACTCGGTTCGACTTCCAAAGTGA 38 Query 94971 TGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | ||||| ||||| | || |||||||| |||||||| Sbjct 37 TCGTTTTACCAGTCAATGTCTTCACAAAAATCTGCAT 1 >seq1104 Length=79538 Score = 93.3 bits (102), Expect = 4e-14 Identities = 152/217 (70%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA- 94851 |||||||||||||| | ||| || || || || | || |||| | | | ||| || Sbjct 62165 CGCAACACCAAGTGAAGAGTGGACTCTTTCTGGATATTGTAAT--CAGACAATGTACGAC 62108 Query 94852 -ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTT 94910 ||| |||||||| || || ||||||| | | || ||||| || || || ||||||| Sbjct 62107 CATCTTCCAGCTGCTTCCCAGCAAAGATCAGACGCTGTTGATCGGGTGGGATTCCTTCTT 62048 Query 94911 TGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGA 94970 | || | ||| || ||||| || | | |||||| | ||||| || | |||| Sbjct 62047 TATCTTGAATCTTAGCCTTCACATTCTCAATGGTGTCACTCGGTTCGACTTCCAAAGTGA 61988 Query 94971 TGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | ||||| ||||| | || |||||||| |||||||| Sbjct 61987 TCGTTTTACCAGTCAATGTCTTCACAAAAATCTGCAT 61951 Score = 93.3 bits (102), Expect = 4e-14 Identities = 152/217 (70%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA- 94851 |||||||||||||| | ||| || || || || | || |||| | | | ||| || Sbjct 62393 CGCAACACCAAGTGAAGAGTGGACTCTTTCTGGATATTGTAAT--CAGACAATGTACGAC 62336 Query 94852 -ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTT 94910 ||| |||||||| || || ||||||| | | || ||||| || || || ||||||| Sbjct 62335 CATCTTCCAGCTGCTTCCCAGCAAAGATCAGACGCTGTTGATCGGGTGGGATTCCTTCTT 62276 Query 94911 TGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGA 94970 | || | ||| || ||||| || | | |||||| | ||||| || | |||| Sbjct 62275 TATCTTGAATCTTAGCCTTCACATTCTCAATGGTGTCACTCGGTTCGACTTCCAAAGTGA 62216 Query 94971 TGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | ||||| ||||| | || |||||||| |||||||| Sbjct 62215 TCGTTTTACCAGTCAATGTCTTCACAAAAATCTGCAT 62179 Score = 89.7 bits (98), Expect = 5e-13 Identities = 151/217 (70%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA- 94851 |||||||||||||| | ||| || || || || | || |||| | | | ||| || Sbjct 61709 CGCAACACCAAGTGAAGAGTGGACTCTTTCTGGATATTGTAAT--CAGACAATGTACGAC 61652 Query 94852 -ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTT 94910 ||| |||||||| || || ||||||| | | || ||||| || || || ||||||| Sbjct 61651 CATCTTCCAGCTGCTTCCCAGCAAAGATCAGACGCTGTTGATCGGGTGGGATTCCTTCTT 61592 Query 94911 TGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGA 94970 | || | || || ||||| || | | |||||| | ||||| || | |||| Sbjct 61591 TATCTTGGATCTTAGCCTTCACATTCTCAATGGTGTCACTCGGTTCGACTTCCAAAGTGA 61532 Query 94971 TGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | ||||| ||||| | || |||||||| |||||||| Sbjct 61531 TCGTTTTACCAGTCAATGTCTTCACAAAAATCTGCAT 61495 Score = 89.7 bits (98), Expect = 5e-13 Identities = 151/217 (70%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA- 94851 |||||||||||||| | ||| || || || || | || |||| | | | ||| || Sbjct 61937 CGCAACACCAAGTGAAGAGTGGACTCTTTCTGGATATTGTAAT--CAGACAATGTACGAC 61880 Query 94852 -ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTT 94910 ||| |||||||| || || ||||||| | | || ||||| || || || ||||||| Sbjct 61879 CATCTTCCAGCTGCTTCCCAGCAAAGATCAGACGCTGTTGATCGGGTGGGATTCCTTCTT 61820 Query 94911 TGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGA 94970 | || | || || ||||| || | | |||||| | ||||| || | |||| Sbjct 61819 TATCTTGGATCTTAGCCTTCACATTCTCAATGGTGTCACTCGGTTCGACTTCCAAAGTGA 61760 Query 94971 TGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | ||||| ||||| | || |||||||| |||||||| Sbjct 61759 TCGTTTTACCAGTCAATGTCTTCACAAAAATCTGCAT 61723 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448124021004240