Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20haematobium_20[refseq_20GCF_5F000699445.1_202014-06- 09] 29,834 sequences; 375,894,156 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq680 172 9e-39 seq175 147 3e-31 seq25676 123 4e-24 >seq680 Length=164385 Score = 172 bits (190), Expect = 9e-39 Identities = 201/269 (75%), Gaps = 2/269 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||| | ||||||| | | || || || |||||||| || ||||| ||||| || || Sbjct 145763 GCCAAGAGACATCGCA-AGGTGTTGCGTGACAACATCCAGGGTATCACAAAGCCTGCAAT 145821 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||||||||||||||| ||||| || || || | || |||||| |||| || |||| Sbjct 145822 CCGTCGTCTGGCTCGTCGAGGTGGTGTGAAACGCATTTCAGGATTGATCTACGAGGAGAC 145881 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||||| |||| |||| | || || ||| ||| |||| |||||| || ||| || || Sbjct 145882 TCGTGGTGTTCTGAAAGTGTTTCTGGAGAACGTGATCCGTGATGCAGTCACCTACACAGA 145941 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||||||| | ||||| || || | ||||| | || || || |||||||| ||||| Sbjct 145942 GCACGCTAAGAGGAAGACAGTGACAGCTATGGACGTGGTGTACGCTTTGAAACGCCAAGG 146001 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAAT 16700 |||| | || ||||| || |||||| Sbjct 146002 TCGTACTTTGTACGGTTTCGGTGGTTAAT 146030 Score = 172 bits (190), Expect = 9e-39 Identities = 201/269 (75%), Gaps = 2/269 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||| | ||||||| | | || || || |||||||| || ||||| ||||| || || Sbjct 163557 GCCAAGAGACATCGCA-AGGTGTTGCGTGACAACATCCAGGGTATCACAAAGCCTGCAAT 163615 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||||||||||||||| ||||| || || || | || |||||| |||| || |||| Sbjct 163616 CCGTCGTCTGGCTCGTCGAGGTGGTGTGAAACGCATTTCAGGATTGATCTACGAGGAGAC 163675 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||||| |||| |||| | || || ||| ||| |||| |||||| || ||| || || Sbjct 163676 TCGTGGTGTTCTGAAAGTGTTTCTGGAGAACGTGATCCGTGATGCAGTCACCTACACAGA 163735 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||||||| | ||||| || || | ||||| | || || || |||||||| ||||| Sbjct 163736 GCACGCTAAGAGGAAGACAGTGACAGCTATGGACGTGGTGTACGCTTTGAAACGCCAAGG 163795 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAAT 16700 |||| | || ||||| || |||||| Sbjct 163796 TCGTACTTTGTACGGTTTCGGTGGTTAAT 163824 >seq175 Length=469103 Score = 147 bits (162), Expect = 3e-31 Identities = 180/246 (73%), Gaps = 0/246 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || |||||||||||||| || || || || ||||| ||||| || ||||| ||||| Sbjct 248701 CTGCGCGATAACATCCAAGGTATTACGAAACCTGCTATTCGTCGCCTTGCTCGCCGTGGA 248760 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || || || | ||||| ||| |||| || || | ||||| ||| ||||| | || Sbjct 248761 GGTGTAAAACGCATTTCTGGTTTGATCTACGAGGAAACTCGTGGTGTGTTGAAAGTATTT 248820 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || | | ||||| | ||| ||| || || || ||||| || || || ||||| || Sbjct 248821 CTGGAAAATGTTATTCGTGACGCTGTCACATACACGGAGCATGCCAAGCGGAAGACAGTA 248880 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGA 16693 ||| ||||||| | || ||||| |||||||| || || |||| | || |||||||| Sbjct 248881 ACCGCCATGGACGTAGTATATGCTTTGAAACGCCAGGGTCGTACATTGTACGGTTTTGGT 248940 Query 16694 AGTTAA 16699 ||||| Sbjct 248941 GGTTAA 248946 >seq25676 Length=227 Score = 123 bits (136), Expect = 4e-24 Identities = 138/182 (76%), Gaps = 2/182 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||| | ||||||| | | || || || |||||||| || ||||| ||||| || || Sbjct 47 GCCAAGAGACATCGCA-AGGTGTTGCGTGACAACATCCAGGGTATCACAAAGCCTGCAAT 105 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||||||||||||||| ||||| || || || | || |||||| |||| || |||| Sbjct 106 CCGTCGTCTGGCTCGTCGAGGTGGTGTGAAACGCATTTCAGGATTGATCTACGAGGAGAC 165 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||||| |||| |||| | || || ||| ||| |||| |||||| || ||| || || Sbjct 166 TCGTGGTGTTCTGAAAGTGTTTCTGGAGAACGTGATCCGTGATGCAGTCACCTACACAGA 225 Query 16612 GC 16613 || Sbjct 226 GC 227 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79047922564962