Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20haematobium_20[refseq_20GCF_5F000699445.1_202014-06- 09] 29,834 sequences; 375,894,156 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq1010 143 3e-29 >seq1010 Length=92424 Score = 143 bits (158), Expect = 3e-29 Identities = 573/907 (63%), Gaps = 52/907 (6%) Strand=Plus/Plus Query 21187 TTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATTC 21246 |||||| |||| ||||| || || ||||| |||||||||||||| | |||||| ||| Sbjct 81947 TTGATATTCACCAACTCGCTTCTCAAAAAAGTTTGTCTTTCCTTCGATCGATATATTTTC 82006 Query 21247 CATAAAATCAAATGGATTTTCAGATTTAAATATTTTA----------------------T 21284 |||||| ||||| ||||| ||||| | | | || | | | Sbjct 82007 CATAAAGTCAAAAGGATTGTCAGAATGATACATCTAAACGAAAACGATTAAAAGAAAATT 82066 Query 21285 TACAACCC------------AGTTCTGATAATAATCTATCTGCTACAAATTCTATATATT 21332 ||||| || ||||| || || || ||||| | |||||| || || | Sbjct 82067 TACAAACCTTTTCATAACCAAGTTCAACTAGTAGCCTGTCTGCGATAAATTCAATGTACT 82126 Query 21333 GACACATTAATTCACAATTCATACCGATCAATTTTACAGGAAGAGCTTTTGTCAAAAAAG 21392 ||||||| | || |||||||| || || || | || || ||||||| || ||||| Sbjct 82127 GACACATCAGTTTGCAATTCATTCCAATTAAGCTGACTGGTAGAGCTTCTGATAAAAACT 82186 Query 21393 ATTTTTCTAT-AGAGACGGCTTCAACAATTATATTTATTATCCTAGATGTACT----AGG 21447 || |||||| ||| || || || ||||| | | | | | || || | | Sbjct 82187 CTTGTTCTATTAGA-ACCGCCTCTCTTATTAT-----TGACTCGACACGTTCTTCCGAAG 82240 Query 21448 GGGATACAATAAT-TGTTTAAACATCAAACATGCAAAATCACAATGCAAACCTTCATCCC 21506 | | ||||| |||||||| | | ||| || ||||||||||| | ||||| || | Sbjct 82241 GCTTTTTGATAATATGTTTAAATAATAGACAAGCGAAATCACAATGTAGTCCTTCGTCTC 82300 Query 21507 TACTTATTAATTCATTAGAAAATGTTAAACCGGGCATTAATCCTCTCTTTTTTAACCAAA 21566 |||| ||||||||||| ||| | | || ||||| | |||| || || | ||| | Sbjct 82301 TACTGATTAATTCATTGCTAAAAGACAGTCCAGGCATAAGACCTCGTTTCTTAAGCCAGA 82360 Query 21567 ATATTGACGCAAATGCT-CCTGAAAAGAAAATGCCCTCAACGGCAGCAAATGCAACTAAT 21625 |||| | || || ||| || ||||| |||| || || || || ||||| |||| ||| Sbjct 82361 ATATAGCTGCGAA-GCTACCAGAAAAAAAAACACCTTCCACTGCTGCAAAAGCAATTAAA 82419 Query 21626 CGTTCACCGTATGTAGATTCTTTATCCAATATCCATTTTTCTGCCCATTTTGCCTTTTCT 21685 ||||| | | ||||||| ||| ||||| | | |||||| | ||||||| | Sbjct 82420 CGTTCTGCAAAAGTAGATTTGGAATCTCCAATCCAATCTAATGCCCACTGAGCCTTTTTT 82479 Query 21686 TTAATACAA--TCAATTGTATCAATAGCTTTTAAAAGATGAtttttttCATCTACATCGG 21743 || |||| | | ||| | || || || || ||| | |||| | || Sbjct 82480 GCAACACAAGTTAAGTTGCTT--ATGGCGTTGAAGAGAAAGTCCCTTTCTTTGGAGTCTT 82537 Query 21744 TTATGNNNNNNNNNNNNNNNNNACTATACATTTCAGAATGTATATTTTCTATCGCTATCT 21803 | ||| | ||||||||||| || ||||| || || ||||||| Sbjct 82538 TGATGTATGTATCAATTAATAAAGAGTACATTTCAGAGTGAATATTCTCGATAGCTATCT 82597 Query 21804 GAAATCCGTAAAAACATCTTGCCTCTGAACATTGAACCTCGGAATAAAATCGTTGAGCCA 21863 | | ||| ||||| || | |||||| || || || || |||| | Sbjct 82598 GCATTCCATAAAAGCAACGAACCTCTGGGATCTGGACTTCCTGGCTGAAGCGTTCTAGGA 82657 Query 21864 AGTTTTCATTTACTATTCCATCACTGGCGGCAAAAAATGCCAATATATTTTTTATAAAAT 21923 ||| || ||| ||||| ||||| || ||||| || || || | | ||| |||| Sbjct 82658 GGTTCTCGAGTACAATTCCGTCACTCGCCGCAAAGAAAGCTAACACGTAGGATATGAAAT 82717 Query 21924 ATCGTTCGTTATCTGTTAATTTTTTCCAATCTAATAAATCTTTTGATAAATCTACTTCTT 21983 ||||| | | | | | ||||| || | |||||| || ||||| || |||| Sbjct 82718 GACGTTCCCCAACCTTGAGCGACTCCCAATGTATGAGATCTTTGGACAAATCCACCTCTT 82777 Query 21984 CAGTTGTCCAAAAGCTAGCAATAGCCTTTTTATACATAATCCAGATATCATTATATATTA 22043 | |||||||| ||| | |||||| ||||| | | ||||| ||| | |||| || Sbjct 82778 CCACAGTCCAAAAAGAAGCTACAGCCTTCTTATAAAAATGCCAGACATCGTGATATTCTA 82837 Query 22044 TTGGAAA 22050 | || || Sbjct 82838 TGGGGAA 82844 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531702440894160