Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20haematobium_20[refseq_20GCF_5F000699445.1_202014-06- 09] 29,834 sequences; 375,894,156 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq1010 226 4e-54 seq7458 96.9 4e-15 seq7115 82.4 1e-10 >seq1010 Length=92424 Score = 226 bits (250), Expect = 4e-54 Identities = 618/942 (66%), Gaps = 47/942 (5%) Strand=Plus/Plus Query 33015 TTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTTC 33074 ||| |||||||| || || || || ||||| || || |||||||| | ||||||||||| Sbjct 81947 TTGATATTCACCAACTCGCTTCTCAAAAAAGTTTGTCTTTCCTTCGATCGATATATTTTC 82006 Query 33075 CATGAAATCAAACGGATTGGTAACATTATAAAttttt----------ttAAATCCCAATT 33124 ||| || ||||| |||||| | || ||| || | ||||| |||| Sbjct 82007 CATAAAGTCAAAAGGATTGTCAGAATGATACATCTAAACGAAAACGATTAAAAGAAAATT 82066 Query 33125 CAGAAA-----------------TCAAT-------CTATCCGCGACGAATTCTATATATG 33160 | ||| |||| || || |||| ||||| || || Sbjct 82067 TACAAACCTTTTCATAACCAAGTTCAACTAGTAGCCTGTCTGCGATAAATTCAATGTACT 82126 Query 33161 TTTTCATCATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATT 33220 ||||| || ||||||||||| || | | ||||| ||||| | | | ||| | Sbjct 82127 GACACATCAGTTTGCAATTCATTCCAATTAAGCTGACTGGTAGAGCTTCTGATAAAAACT 82186 Query 33221 CTTGTTCAATGGATACCGCATCTGTTATAATAGA-TCTA-ACGGTTTCTTCACTCGG-TG 33277 ||||||| || ||||| ||| |||| || || || | ||| |||||| || | Sbjct 82187 CTTGTTCTATTAGAACCGCCTCTCTTATTATTGACTCGACACG--TTCTTCCGAAGGCTT 82244 Query 33278 GATGCAATAA-ATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTA 33336 || |||| ||||||||| | | ||| |||||||| || || || || ||||||||| Sbjct 82245 TTTG--ATAATATGTTTAAATAATAGACAAGCGAAATCACAATGTAGTCCTTCGTCTCTA 82302 Query 33337 CTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAAT 33396 || |||| ||| ||| ||| | ||||| ||||| || || || || |||||||| ||| Sbjct 82303 CTGATTAATTCATTGCTAAAAGACAGTCCAGGCATAAGACCTCGTTTCTTAAGCCAGAAT 82362 Query 33397 ATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTC 33456 || | ||||| |||||||| || | ||||| ||||| ||||| ||||| | | Sbjct 82363 ATAGCTGCGAAGCTACCAGAAAAAAAAACACCTTCCACTGCTGCAAAAGCAATTAAACGT 82422 Query 33457 TCTCCATAACCGGCGCTGTCATGT---ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTT 33513 ||| || || | || || | ||||| | | ||||| | ||||| ||| Sbjct 82423 TCTGCAAAAGTAGATTTGGAATCTCCAATCCAATCTAATGCCCACTGAGCCTTTTTTGCA 82482 Query 33514 ACACAAGGCATCGTTTC-TATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAAC 33572 ||||||| | ||| | |||||| || |||||| ||| |||| || ||||| | Sbjct 82483 ACACAAGTTA-AGTTGCTTATGGCGTTGAAGAGAAAGTCCCTTTCTTTGGAGTCTTTGAT 82541 Query 33573 ATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAA 33632 || ||||| || || | | |||||||| || ||||| || || || || ||||| | Sbjct 82542 GTATGTATCAATTAATAAAGAGTACATTTCAGAGTGAATATTCTCGATAGCTATCTGCAT 82601 Query 33633 TCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCCGCCAAATT 33692 ||| || || || | | |||| | ||||| ||||| | || ||||| | || Sbjct 82602 TCCATAAAAGCAACGAACCTCTGGGATCTGGACTTCCTGGCTGAAGCGTTCTAGGAGGTT 82661 Query 33693 TTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTT 33752 || || ||||||||||| || ||||| || || || || | ||| |||| Sbjct 82662 CTCGAGTACAATTCCGTCACTCGCCGCAAAGAAAGCTAACACGTAGGATATGAAATGACG 82721 Query 33753 TTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCAC 33812 ||| | | || | ||||| ||| |||||| || | ||| || |||||||| Sbjct 82722 TTCCCCAACCTTGAGCGACTCCCAATGTATGAGATCTTTGGACAAATCCACCTCTTCCAC 82781 Query 33813 TGTCCAAAATGATGCCTCTGCCTTTTTATACATGTTCCAGATGTCATAATATTGGATTGG 33872 |||||||| || || | ||||| ||||| | | ||||| || | ||||| || || Sbjct 82782 AGTCCAAAAAGAAGCTACAGCCTTCTTATAAAAATGCCAGACATCGTGATATTCTATGGG 82841 Query 33873 GAAAATAACAAATCTATTTGGATTTGGTGCAAGGATGGGTTC 33914 ||||| || || | | ||| |||||| || | |||||| Sbjct 82842 GAAAAGGACGAAACGGTGTGGGTTTGGTTTCAGTAAGGGTTC 82883 >seq7458 Length=1001 Score = 96.9 bits (106), Expect = 4e-15 Identities = 134/186 (72%), Gaps = 4/186 (2%) Strand=Plus/Plus Query 63495 CCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATACCC 63554 || || ||||| || ||||||| || | ||| ||| ||| ||||| || || || || Sbjct 61 CCAATACCCCCGGCATTTTTAGATATAATTGCACATTCTTTCAACGTATCGTAAATGCCT 120 Query 63555 TCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACA--TTTGGTGACGACTAG 63612 ||||| ||||| || |||| | | |||||||| || || | | |||| | || Sbjct 121 TCTATACTATCGTCTTTCATAGTGATAAGAAAACAACTTGAAAGCTGTGGTTTGGG--AG 178 Query 63613 TTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGT 63672 |||| || ||||| | || || ||||| || ||||||||||||||||| | || || | Sbjct 179 TTCCAGCGTTAAAAAGTGTCGGTGAAGCATGTGTAAACCATTTTTCAGACATCAGGTTAT 238 Query 63673 ACGTCT 63678 |||||| Sbjct 239 ACGTCT 244 >seq7115 Length=1065 Score = 82.4 bits (90), Expect = 1e-10 Identities = 144/205 (70%), Gaps = 6/205 (3%) Strand=Plus/Minus Query 63900 GGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTA 63959 |||||||| ||| || |||||||| || ||| ||||| || || || || | Sbjct 591 GGAGAATGCTTCTTGGTTCGAGGATTAATGTAACCGAACAAATCTTCAATAACATCTGAA 532 Query 63960 AA--TAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGG 64017 || ||| ||| |||||||||||||||||||| ||||| | | || || | ||| | Sbjct 531 AACCTAGATTTC--GTTTCCTTGTGTAGATTTGAAACGGCAAGACGAGCAGCCAAAATAG 474 Query 64018 CATAATCCGGATGTTGTGTAGTACAAG-TGGCTGCTATTTCGGCTGCCAGAGTGTCCAAT 64076 |||| || |||||| ||| | || | | || | | |||||||||||| | || ||| Sbjct 473 CATATTCATGATGTTTTGTTAT-CATGCTTGCGCATGTCTCGGCTGCCAGATTATCTAAT 415 Query 64077 TCTACCGTTGTTACTCCATTATATA 64101 || || || || ||||| ||||| Sbjct 414 TCCACAGTAGTCACTCCCGGATATA 390 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622714887415440