Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20haematobium_20[refseq_20GCF_5F000699445.1_202014-06- 09] 29,834 sequences; 375,894,156 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq3397 96.9 9e-15 seq165 91.5 4e-13 >seq3397 Length=2750 Score = 96.9 bits (106), Expect = 9e-15 Identities = 109/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 364144 CAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAAC 364203 |||||||| ||||| | || | |||||||||||| ||||| ||||| ||||| || || Sbjct 366 CAGATTGAAACAGGCAATCCATTTATGTTGTACAAGGATTCTTGCAATCGCAAATCAAAT 425 Query 364204 CAGCAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACACC 364263 || || || || || ||||||| ||||||||||| ||||| || |||| || | Sbjct 426 CACCAACATCTAGGCACAATTCGTTGTAGCAACCTATGCACCGAAATAGTTGAGTATTCT 485 Query 364264 GCTCCCGACGAGACTGCCGTATGTAA 364289 | || ||||| || || || ||||| Sbjct 486 TCACCAGACGAAACAGCTGTCTGTAA 511 >seq165 Length=488026 Score = 91.5 bits (100), Expect = 4e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 111762 GGTCTTGGTGTTCCGTTTAATATTGCAAGTTACGCACTACTTACTTGCTTAATCGCTCAT 111821 ||||||||||| ||||| |||||||||||||| || || | || | | || |||||| Sbjct 487789 GGTCTTGGTGTACCGTTCAATATTGCAAGTTATGCTTTATTAACATATATGATTGCTCAT 487730 Query 111822 TTTACAAATCTCAAACCGGGTGAATTCATTCACGTTATCGGAGATGCGCATGTTTACACA 111881 |||| | | ||||| ||||| ||| ||||| || || ||||||||| |||| || Sbjct 487729 ATTACTGGTTTAAAACCTGGTGAGTTCGTTCACACAATTGGCGATGCGCATATTTATTCA 487670 Query 111882 AACCA 111886 ||||| Sbjct 487669 AACCA 487665 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1302855395530188