Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20haematobium_20[refseq_20GCF_5F000699445.1_202014-06- 09] 29,834 sequences; 375,894,156 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq1104 147 1e-30 seq2499 140 2e-28 seq26094 129 4e-25 seq86 118 7e-22 seq4838 109 4e-19 seq2294 104 2e-17 seq153 93.3 3e-14 >seq1104 Length=79538 Score = 147 bits (162), Expect = 1e-30 Identities = 170/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | | |||||||||||| ||||||||| ||| || || ||||||||||||| Sbjct 62179 TACCACCACGAAGACGCAACACCAAGTGAAGAGTGGACTCTTTCTGGATATTGTAATCAG 62120 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 |||| ||| | || || | || || || ||||| || || || |||||||||| | Sbjct 62119 ACAATGTACGACCATCTTCCAGCTGCTTCCCAGCAAAGATCAGACGCTGTTGATCGGGTG 62060 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| |||||||| || ||| || ||||||||||| | || || | ||| | Sbjct 62059 GGATTCCTTCTTTATCTTGAATCTTAGCCTTCACATTCTCAATGGTGTCACTCGGTTCGA 62000 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||| || || || |||||||| ||||| || ||||| || |||||||| Sbjct 61999 CTTCCAAAGTGATCGTTTTACCAGTCAATGTCTTCACAAAAATCTGCAT 61951 Score = 143 bits (158), Expect = 2e-29 Identities = 169/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | | |||||||||||| ||||||||| ||| || || ||||||||||||| Sbjct 61723 TACCACCACGAAGACGCAACACCAAGTGAAGAGTGGACTCTTTCTGGATATTGTAATCAG 61664 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 |||| ||| | || || | || || || ||||| || || || |||||||||| | Sbjct 61663 ACAATGTACGACCATCTTCCAGCTGCTTCCCAGCAAAGATCAGACGCTGTTGATCGGGTG 61604 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| |||||||| || || || ||||||||||| | || || | ||| | Sbjct 61603 GGATTCCTTCTTTATCTTGGATCTTAGCCTTCACATTCTCAATGGTGTCACTCGGTTCGA 61544 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||| || || || |||||||| ||||| || ||||| || |||||||| Sbjct 61543 CTTCCAAAGTGATCGTTTTACCAGTCAATGTCTTCACAAAAATCTGCAT 61495 Score = 143 bits (158), Expect = 2e-29 Identities = 169/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | | |||||||||||| ||||||||| ||| || || ||||||||||||| Sbjct 61951 TACCACCACGAAGACGCAACACCAAGTGAAGAGTGGACTCTTTCTGGATATTGTAATCAG 61892 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 |||| ||| | || || | || || || ||||| || || || |||||||||| | Sbjct 61891 ACAATGTACGACCATCTTCCAGCTGCTTCCCAGCAAAGATCAGACGCTGTTGATCGGGTG 61832 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| |||||||| || || || ||||||||||| | || || | ||| | Sbjct 61831 GGATTCCTTCTTTATCTTGGATCTTAGCCTTCACATTCTCAATGGTGTCACTCGGTTCGA 61772 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||| || || || |||||||| ||||| || ||||| || |||||||| Sbjct 61771 CTTCCAAAGTGATCGTTTTACCAGTCAATGTCTTCACAAAAATCTGCAT 61723 Score = 141 bits (156), Expect = 6e-29 Identities = 161/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 38102 ACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTC 38161 |||||||||||| ||||||||| ||| || || ||||||||||||||||| ||| | Sbjct 62394 ACGCAACACCAAGTGAAGAGTGGACTCTTTCTGGATATTGTAATCAGACAATGTACGACC 62335 Query 38162 GTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTT 38221 || || | || || || ||||| || || || |||||||||| |||| |||||||| Sbjct 62334 ATCTTCCAGCTGCTTCCCAGCAAAGATCAGACGCTGTTGATCGGGTGGGATTCCTTCTTT 62275 Query 38222 GTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAAT 38281 || ||| || ||||||||||| | || || | ||| ||||| || || || Sbjct 62274 ATCTTGAATCTTAGCCTTCACATTCTCAATGGTGTCACTCGGTTCGACTTCCAAAGTGAT 62215 Query 38282 AGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||||||| ||||| || ||||| || |||||||| Sbjct 62214 CGTTTTACCAGTCAATGTCTTCACAAAAATCTGCAT 62179 >seq2499 Length=8297 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 1920 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 1861 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 1860 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 1826 >seq26094 Length=224 Score = 129 bits (142), Expect = 4e-25 Identities = 158/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 38102 ACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTC 38161 |||||||||||| ||||||||| ||| || || ||||||||||||||||| ||| | Sbjct 216 ACGCAACACCAAGTGAAGAGTGGACTCTTTCTGGATATTGTAATCAGACAATGTACGACC 157 Query 38162 GTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTT 38221 || || | || || || ||||| || || || || || |||| || | |||||||| Sbjct 156 ATCTTCCAGCTGCTTCCCAGCAAAGATCAGACGCTGCTGGTCGGGTGGAATTCCTTCTTT 97 Query 38222 GTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAAT 38281 || ||| || ||||||||||| | || || | ||| ||||| || || || Sbjct 96 ATCTTGAATCTTAGCCTTCACATTCTCAATGGTGTCACTCGGTTCGACTTCCAAAGTGAT 37 Query 38282 AGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||||||| ||||| || ||||| || |||||||| Sbjct 36 CGTTTTACCAGTCAATGTCTTCACAAAAATCTGCAT 1 >seq86 Length=635287 Score = 118 bits (130), Expect = 7e-22 Identities = 83/95 (87%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||| |||||||||||| ||||||||||||| ||||||||||||| || |||||||| Sbjct 408685 AAGACCGTTCCCTTGGTTGTGGTTTCGCTAAATAGTAGATAGGGACAGTGGGAATCTCGT 408744 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| || ||||| ||||||||||||||||||| Sbjct 408745 TAATCCATTTATGCGTGTCACTAATTAGATGACGA 408779 >seq4838 Length=1587 Score = 109 bits (120), Expect = 4e-19 Identities = 72/80 (90%), Gaps = 5/80 (6%) Strand=Plus/Minus Query 25917 GCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGTTAATCCTTTCATGCG 25971 ||||||||||||||||||||||||||||| || |||||||| ||||| |||||||| Sbjct 323 GCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTCAATCCATTCATGCG 264 Query 25972 CGTCACTAATTAGATGACGA 25991 |||||||||||||||||||| Sbjct 263 CGTCACTAATTAGATGACGA 244 >seq2294 Length=11734 Score = 104 bits (114), Expect = 2e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 38126 CTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAA 38185 ||| || || || ||||| ||||||| | |||| | || || || || || || || || Sbjct 1533 CTCTTTCTGGATGTTGTAGTCAGACAGAGTACGTCCATCTTCCAACTGCTTACCAGCGAA 1474 Query 38186 TATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATT 38245 ||| | |||||||| || | || | ||||||||||| |||||| |||||||| Sbjct 1473 TATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTGTCTTGAATTTTAGCTTTCACATT 1414 Query 38246 CTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCAC 38305 || | |||||| | | ||||| ||||| | ||| || ||||| | ||| || ||||| Sbjct 1413 CTCAATAGTATCACTAGGCTCAACCTCTAACGGAATCGTCTTACCAGGCAACGTCTTCAC 1354 Query 38306 GAATATCTGCAT 38317 || || ||||| Sbjct 1353 AAAGATTTGCAT 1342 >seq153 Length=504212 Score = 93.3 bits (102), Expect = 3e-14 Identities = 77/94 (82%), Gaps = 5/94 (5%) Strand=Plus/Minus Query 25903 AGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGTT 25957 ||||||| |||||| ||||||||| ||||||||||||| ||| |||||||||||| Sbjct 490964 AGCCCGTCGCCTTGGTTGTGGTTTCACTAGATAGTAGATCGGGATAGTGGTAATCTCGTT 490905 Query 25958 AATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 ||||| || || || |||| |||||||||||| Sbjct 490904 AATCCATTTATATGCATCACCTATTAGATGACGA 490871 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334825412570054