Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20haematobium_20[refseq_20GCF_5F000699445.1_202014-06- 09] 29,834 sequences; 375,894,156 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq1010 250 3e-61 seq7458 109 7e-19 >seq1010 Length=92424 Score = 250 bits (276), Expect = 3e-61 Identities = 512/751 (68%), Gaps = 15/751 (2%) Strand=Plus/Plus Query 32493 CTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTTA 32552 || ||||||| |||||| || || ||||| || ||||||||||| || | | Sbjct 82102 CTGTCTGCGATAAATTCAATGTACTGACACATCAGTTTGCAATTCATTCCAATTAAGCTG 82161 Query 32553 ACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAAT-AGAGACCGCGTCTGTTATAATAGA 32611 ||||| ||||| | | | ||| |||||||| || ||| ||||| ||| |||| || || Sbjct 82162 ACTGGTAGAGCTTCTGATAAAAACTCTTGTTCTATTAGA-ACCGCCTCTCTTATTATTGA 82220 Query 32612 TCTTACTGTTTCTTCACTCGGTGGATACA--ATAA-ATGTTTAAACATCAAACATGCGAA 32668 || |||||| || || | |||| ||||||||| | | ||| ||||| Sbjct 82221 CTCGACACGTTCTTC---CGAAGGCTTTTTGATAATATGTTTAAATAATAGACAAGCGAA 82277 Query 32669 ATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCAT 32728 ||| || ||||| || ||||||||||| |||||||| ||| ||| | ||||| ||||| Sbjct 82278 ATCACAATGTAGTCCTTCGTCTCTACTGATTAATTCATTGCTAAAAGACAGTCCAGGCAT 82337 Query 32729 TAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTC 32788 || || || || |||||||| ||||| | || || |||||||| |||| ||||| Sbjct 82338 AAGACCTCGTTTCTTAAGCCAGAATATAGCTGCGAAGCTACCAGAAAAAAAAACACCTTC 82397 Query 32789 TACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGT---ATCCACTT 32845 ||||| ||||| ||||| | | ||| || || | || || | ||||| | Sbjct 82398 CACTGCTGCAAAAGCAATTAAACGTTCTGCAAAAGTAGATTTGGAATCTCCAATCCAATC 82457 Query 32846 TTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCA--TTGTCTCTATAGCATTAAAGAGA 32903 | ||||| | ||||| ||| ||||||| | ||| || ||| || || |||||| Sbjct 82458 TAATGCCCACTGAGCCTTTTTTGCAACACAAGTTAAGTTG-CT-TATGGCGTTGAAGAGA 82515 Query 32904 TAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAA 32963 ||| |||| || ||||| | ||||||||||| || | | |||||||| || Sbjct 82516 AAGTCCCTTTCTTTGGAGTCTTTGATGTATGTATCAATTAATAAAGAGTACATTTCAGAG 82575 Query 32964 TGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACT 33023 ||||| || || || || || || | ||| || ||||| | | |||| | ||||| ||| Sbjct 82576 TGAATATTCTCGATAGCTATCTGCATTCCATAAAAGCAACGAACCTCTGGGATCTGGACT 82635 Query 33024 TCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAAC 33083 || | || |||||| | || || || ||||||||||| || ||||| || Sbjct 82636 TCCTGGCTGAAGCGTTCTAGGAGGTTCTCGAGTACAATTCCGTCACTCGCCGCAAAGAAA 82695 Query 33084 GCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATA 33143 || || || | ||| |||| ||| | | || | ||||| ||| | Sbjct 82696 GCTAACACGTAGGATATGAAATGACGTTCCCCAACCTTGAGCGACTCCCAATGTATGAGA 82755 Query 33144 TCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATA 33203 ||||| || | |||||| |||||||| |||||||| || || | ||||| ||||| | | Sbjct 82756 TCTTTGGACAAATCCACCTCTTCCACAGTCCAAAAAGAAGCTACAGCCTTCTTATAAAAA 82815 Query 33204 TTCCAGATGTCATGATATTGAATTGGAAAAA 33234 | ||||| || ||||||| || || |||| Sbjct 82816 TGCCAGACATCGTGATATTCTATGGGGAAAA 82846 >seq7458 Length=1001 Score = 109 bits (120), Expect = 7e-19 Identities = 137/186 (74%), Gaps = 4/186 (2%) Strand=Plus/Plus Query 63350 CCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCC 63409 || || ||||| || ||||||| || | ||| ||| ||| |||||||| || ||||| Sbjct 61 CCAATACCCCCGGCATTTTTAGATATAATTGCACATTCTTTCAACGTATCGTAAATGCCT 120 Query 63410 TCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACA--TTTGGTGACGACTAG 63467 ||||||||||| || |||| | | |||||||| || || | | |||| | || Sbjct 121 TCTATACTATCGTCTTTCATAGTGATAAGAAAACAACTTGAAAGCTGTGGTTTGG--GAG 178 Query 63468 TTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTGT 63527 |||| || ||||| | || || ||||| || ||||||||||||||||| | || || | Sbjct 179 TTCCAGCGTTAAAAAGTGTCGGTGAAGCATGTGTAAACCATTTTTCAGACATCAGGTTAT 238 Query 63528 ACGTCT 63533 |||||| Sbjct 239 ACGTCT 244 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633395702786400