Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20haematobium_20[refseq_20GCF_5F000699445.1_202014-06- 09] 29,834 sequences; 375,894,156 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq26094 125 6e-24 seq1104 122 8e-23 seq2294 109 5e-19 seq52 86.0 5e-12 >seq26094 Length=224 Score = 125 bits (138), Expect = 6e-24 Identities = 156/211 (74%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| ||||| |||||| | ||||| | ||||| || || | Sbjct 1 ATGCAGATTTTTGTGAAGACATTGACTGGTAAAACGATCACTTTGGAAGTCGAACCGAGT 60 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| || ||| ||||| | || | ||| || |||||||| |||||||| ||||| Sbjct 61 GACACCATTGAGAATGTGAAGGCTAAGATTCAA-GATAAAGAAGGAATTCCACCCGACCA 119 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||||| | || ||||| || || || | ||||||| ||| || || |||||||| Sbjct 120 GCAGCGTCTGATCTTTGCTGGGAAGCAGCTGGAAGATGGTCGTACATTGTCTGATTACAA 179 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTG 25208 ||| || ||||| ||||| || || || ||| Sbjct 180 TATCCAGAAAGAGTCCACTCTTCACTTGGTG 210 >seq1104 Length=79538 Score = 122 bits (134), Expect = 8e-23 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| ||||| |||||| | ||||| | ||||| || || | Sbjct 61495 ATGCAGATTTTTGTGAAGACATTGACTGGTAAAACGATCACTTTGGAAGTCGAACCGAGT 61554 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || ||| ||||| || ||| || |||||||| || ||||| || ||| Sbjct 61555 GACACCATTGAGAATGTGAAGGCTAAGATCCAAGATAAAGAAGGAATCCCACCCGATCAA 61614 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || ||||| || || || | ||||||| ||| || || ||||||||| Sbjct 61615 CAGCGTCTGATCTTTGCTGGGAAGCAGCTGGAAGATGGTCGTACATTGTCTGATTACAAT 61674 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTG 25208 || || ||||| ||||| || || || ||| Sbjct 61675 ATCCAGAAAGAGTCCACTCTTCACTTGGTG 61704 Score = 122 bits (134), Expect = 8e-23 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| ||||| |||||| | ||||| | ||||| || || | Sbjct 61723 ATGCAGATTTTTGTGAAGACATTGACTGGTAAAACGATCACTTTGGAAGTCGAACCGAGT 61782 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || ||| ||||| || ||| || |||||||| || ||||| || ||| Sbjct 61783 GACACCATTGAGAATGTGAAGGCTAAGATCCAAGATAAAGAAGGAATCCCACCCGATCAA 61842 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || ||||| || || || | ||||||| ||| || || ||||||||| Sbjct 61843 CAGCGTCTGATCTTTGCTGGGAAGCAGCTGGAAGATGGTCGTACATTGTCTGATTACAAT 61902 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTG 25208 || || ||||| ||||| || || || ||| Sbjct 61903 ATCCAGAAAGAGTCCACTCTTCACTTGGTG 61932 Score = 122 bits (134), Expect = 8e-23 Identities = 155/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| ||||| |||||| | ||||| | ||||| || || | Sbjct 61951 ATGCAGATTTTTGTGAAGACATTGACTGGTAAAACGATCACTTTGGAAGTCGAACCGAGT 62010 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| || ||| ||||| | || | ||| || |||||||| || ||||| || || Sbjct 62011 GACACCATTGAGAATGTGAAGGCTAAGATTCAA-GATAAAGAAGGAATCCCACCCGATCA 62069 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 |||||| | || ||||| || || || | ||||||| ||| || || |||||||| Sbjct 62070 ACAGCGTCTGATCTTTGCTGGGAAGCAGCTGGAAGATGGTCGTACATTGTCTGATTACAA 62129 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTG 25208 ||| || ||||| ||||| || || || ||| Sbjct 62130 TATCCAGAAAGAGTCCACTCTTCACTTGGTG 62160 Score = 122 bits (134), Expect = 8e-23 Identities = 155/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| ||||| |||||| | ||||| | ||||| || || | Sbjct 62179 ATGCAGATTTTTGTGAAGACATTGACTGGTAAAACGATCACTTTGGAAGTCGAACCGAGT 62238 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| || ||| ||||| | || | ||| || |||||||| || ||||| || || Sbjct 62239 GACACCATTGAGAATGTGAAGGCTAAGATTCAA-GATAAAGAAGGAATCCCACCCGATCA 62297 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 |||||| | || ||||| || || || | ||||||| ||| || || |||||||| Sbjct 62298 ACAGCGTCTGATCTTTGCTGGGAAGCAGCTGGAAGATGGTCGTACATTGTCTGATTACAA 62357 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTG 25208 ||| || ||||| ||||| || || || ||| Sbjct 62358 TATCCAGAAAGAGTCCACTCTTCACTTGGTG 62388 >seq2294 Length=11734 Score = 109 bits (120), Expect = 5e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| ||||| ||||| ||| | ||||| | || | | || || ||| | Sbjct 1341 AATGCAAATCTTTGTGAAGACGTTGCCTGGTAAGACGATTCCGTTAGAGGTTGAGCCTAG 1400 Query 25058 TGACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||| ||||| ||| |||| || |||| ||| ||||||||||| ||||| ||||||| Sbjct 1401 TGATACTATTGAGAATGTGAAAGCTAAAATTCAA-GACAAAGAAGGTATTCCTCCTGACC 1459 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 |||| || | || || || || || || || ||||||| || ||| || || |||| Sbjct 1460 AACAACGTTTGATATTCGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGACTACA 1519 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 | || || ||||| || || ||||| | || || | ||| | ||||| Sbjct 1520 ACATCCAGAAAGAGTCAACCTTACATCTTGTTCTGCGCCTACGTGGAGG 1568 Score = 86.0 bits (94), Expect = 5e-12 Identities = 123/171 (72%), Gaps = 2/171 (1%) Strand=Plus/Plus Query 25058 TGACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||| ||||| ||| |||| || |||| ||| ||||||||||| ||||| ||||||| Sbjct 1173 TGATACTATTGAGAATGTGAAAGCTAAAATTCAA-GACAAAGAAGGTATTCCTCCTGACC 1231 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 |||| || | || || || || || || || ||||||| || ||| || || |||| Sbjct 1232 AACAACGTTTGATATTCGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGACTACA 1291 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 | || || ||||| || || || ||| | || || | ||| | || |||| Sbjct 1292 ACATCCAGAAAGAGTCGACTCTGCATCTTGTCCTTCGTCTACGTGGTGGAA 1342 >seq52 Length=730220 Score = 86.0 bits (94), Expect = 5e-12 Identities = 122/169 (72%), Gaps = 2/169 (1%) Strand=Plus/Plus Query 25058 TGACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||| ||||| ||| |||| || |||| ||| ||||||||||| ||||| ||||||| Sbjct 729567 TGATACTATTGAGAATGTGAAAGCTAAAATTCAA-GACAAAGAAGGTATTCCTCCTGACC 729625 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 |||| || | || || || || || || || ||||||| || ||| || || |||| Sbjct 729626 AACAACGTTTGATATTCGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGACTACA 729685 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 | || || ||||| || || ||||| | || || | ||| | ||||| Sbjct 729686 ACATCCAGAAAGAGTCAACCTTACATCTTGTTCTGCGCCTACGTGGAGG 729734 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433170441126710