Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20haematobium_20[refseq_20GCF_5F000699445.1_202014-06- 09] 29,834 sequences; 375,894,156 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq1010 251 8e-62 >seq1010 Length=92424 Score = 251 bits (278), Expect = 8e-62 Identities = 539/797 (68%), Gaps = 20/797 (3%) Strand=Plus/Plus Query 92924 CTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAAGACGT 92983 || || || | |||||| ||||||||| |||||| | ||||||||||| | | | Sbjct 82102 CTGTCTGCGATAAATTCAATGTACTGACACATCAGTTTGCAATTCATTCCAATTAAGCTG 82161 Query 92984 ACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGATTTCT 93043 || |||||||| || | || || |||| || |||| ||| || ||| | | ||| Sbjct 82162 ACTGGTAGAGCTTCTGATAAAAACTCTTGTTCTATTAGAACCGCCTCTCTTATTATTG-- 82219 Query 93044 ATTACTCTACTATTTGGT-----GGTTTTTGTACGACATAATTGTACATTAAGCACGCAA 93098 |||| || || | || |||| | | || || | | || || || | Sbjct 82220 ---ACTCGACACGTTCTTCCGAAGGCTTTTTGATAATATGTTTAAATAATAGACAAGCGA 82276 Query 93099 AGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTA 93158 | || ||||| |||||||||| || || |||||||| || | | || || | Sbjct 82277 AATCACAATGTAGTCCTTCGTCTCTACTGATTAATTCATTGCTAAAAGACAGTCCAGGCA 82336 Query 93159 ACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTT 93218 || ||||||||||| ||||| ||||| | || || |||||||||||||| | ||||| Sbjct 82337 TAAGACCTCGTTTCTTAAGCCAGAATATAGCTGCGAAGCTACCAGAAAAAAAAACACCTT 82396 Query 93219 CCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGC---GGAATTACTGCTGATCC 93275 |||| |||||||| || | | |||||| |||||| | | ||||| || | |||| Sbjct 82397 CCACTGCTGCAAAAGCAATTAAACGTTCTGCAAAAGTAGATTTGGAAT--CTCCA-ATCC 82453 Query 93276 ATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCG-ATAGCGTTAAAT 93334 | | ||| ||||| | || ||||| || ||||| || ||| | || ||||| || Sbjct 82454 AATCTAATGCCCACTGAGCCTTTTTTGCAACACAAGTTAA-GTTGCTTATGGCGTTGAAG 82512 Query 93335 AGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCA 93394 || | || | || | || ||| ||||||||||| ||||| | ||| ||||||||| Sbjct 82513 AGAAAGTCCCTTTCTTTGGAGTCTTTGATGTATGTATCAATTAATAAAGAGTACATTTCA 82572 Query 93395 GAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGC 93454 || || | |||||| || || || || | ||| || || || | | | || | |||||| Sbjct 82573 GAGTGAATATTCTCGATAGCTATCTGCATTCCATAAAAGCAACGAACCTCTGGGATCTGG 82632 Query 93455 ACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaa 93514 ||||| || || | |||| ||| || || || || || || || ||||| Sbjct 82633 ACTTCCTGGCTGAAGCGTTCTAGGAGGTTCTCGAGTACAATTCCGTCACTCGCCGCAAAG 82692 Query 93515 aaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAATCGGAT 93574 ||||| || | | ||| ||||| || || | || ||| ||||||| | || Sbjct 82693 AAAGCTAACACGTAGGATATGAAATGACGTTCCCCAACCTTGAGCGACTCCCAAT-GTAT 82751 Query 93575 -AGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTA 93633 |||||||| || | ||| || ||||| ||||||||||| || ||| | || || || || Sbjct 82752 GAGATCTTTGGACAAATCCACCTCTTCCACAGTCCAAAAAGAAGCTACAGCCTTCTTATA 82811 Query 93634 CATATCCCATATGTCTTGATATTGAATTGGAAATATGACAAAACGATTAGGGTTATCTTT 93693 | || ||| | || ||||||| || || || | ||| ||||| | ||||| ||| Sbjct 82812 AAAATGCCAGACATCGTGATATTCTATGGGGAAAAGGACGAAACGGTGTGGGTTTGGTTT 82871 Query 93694 TAGTAACGGCTCTAGTT 93710 ||||| || ||||||| Sbjct 82872 CAGTAAGGGTTCTAGTT 82888 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556653132686160