Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20haematobium_20[refseq_20GCF_5F000699445.1_202014-06- 09] 29,834 sequences; 375,894,156 total letters Query= NC_008520.2 Length=132239 Score E Sequences producing significant alignments: (Bits) Value seq523 93.3 4e-14 seq1104 89.7 4e-13 >seq523 Length=224339 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 ||||| |||||||| || || | || || ||||| || ||| | ||| || || Sbjct 140254 ATGCAGATTTTTGTGAAGACACTTACGGGAAAAACTATAACCCTAGAAGTTGAGCCTGCT 140195 Query 111247 GATTCTGTTGGC-CAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCA 111305 ||| | | | ||| ||| | |||| || || ||||||||| | || || || Sbjct 140194 GATACAATAGAAGCAGTTAAGGCGAAAA-TTCAAGATAAAGAAGGCATCCCACCAGACCA 140136 Query 111306 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111365 |||| | || |||| ||| ||||||||| |||||||| |||| | |||| ||||| Sbjct 140135 ACAACGTCTAATTTTTGCTGGCAAACAACTGGAAGATGGACGAACTCTTTCCGACTATAA 140076 Query 111366 TATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 |||||| || ||||| ||||| ||| | || | ||||| || ||||| Sbjct 140075 TATACAGAAGGAATCAACACTTCATCTTGTCCTCCGTCTTCGTGGTGG 140028 >seq1104 Length=79538 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 ||||| |||||||| || || |||| || ||||| || || ||||| ||||| || Sbjct 61951 ATGCAGATTTTTGTGAAGACATTGACTGGTAAAACGATCACTTTGGAAGTCGAACCGAGT 62010 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 || | ||| | || || || ||| || |||||||| | || ||||||| Sbjct 62011 GACACCATTGAGAATGTGAAGGCTAAGATTCAAGATAAAGAAGGAATCCCACCCGATCAA 62070 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 || | || || | ||| || || || |||||||| | || || | ||||| ||| Sbjct 62071 CAGCGTCTGATCTTTGCTGGGAAGCAGCTGGAAGATGGTCGTACATTGTCTGATTACAAT 62130 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 || || ||||| || || || || || ||||||||||| || ||||| Sbjct 62131 ATCCAGAAAGAGTCCACTCTTCACTTGGTGTTGCGTCTTCGTGGTGG 62177 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 ||||| |||||||| || || |||| || ||||| || || ||||| ||||| || Sbjct 61495 ATGCAGATTTTTGTGAAGACATTGACTGGTAAAACGATCACTTTGGAAGTCGAACCGAGT 61554 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 || | ||| | || || || || || |||||||| | || ||||||| Sbjct 61555 GACACCATTGAGAATGTGAAGGCTAAGATCCAAGATAAAGAAGGAATCCCACCCGATCAA 61614 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 || | || || | ||| || || || |||||||| | || || | ||||| ||| Sbjct 61615 CAGCGTCTGATCTTTGCTGGGAAGCAGCTGGAAGATGGTCGTACATTGTCTGATTACAAT 61674 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 || || ||||| || || || || || ||||||||||| || ||||| Sbjct 61675 ATCCAGAAAGAGTCCACTCTTCACTTGGTGTTGCGTCTTCGTGGTGG 61721 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 ||||| |||||||| || || |||| || ||||| || || ||||| ||||| || Sbjct 61723 ATGCAGATTTTTGTGAAGACATTGACTGGTAAAACGATCACTTTGGAAGTCGAACCGAGT 61782 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 || | ||| | || || || || || |||||||| | || ||||||| Sbjct 61783 GACACCATTGAGAATGTGAAGGCTAAGATCCAAGATAAAGAAGGAATCCCACCCGATCAA 61842 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 || | || || | ||| || || || |||||||| | || || | ||||| ||| Sbjct 61843 CAGCGTCTGATCTTTGCTGGGAAGCAGCTGGAAGATGGTCGTACATTGTCTGATTACAAT 61902 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 || || ||||| || || || || || ||||||||||| || ||||| Sbjct 61903 ATCCAGAAAGAGTCCACTCTTCACTTGGTGTTGCGTCTTCGTGGTGG 61949 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 ||||| |||||||| || || |||| || ||||| || || ||||| ||||| || Sbjct 62179 ATGCAGATTTTTGTGAAGACATTGACTGGTAAAACGATCACTTTGGAAGTCGAACCGAGT 62238 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 || | ||| | || || || ||| || |||||||| | || ||||||| Sbjct 62239 GACACCATTGAGAATGTGAAGGCTAAGATTCAAGATAAAGAAGGAATCCCACCCGATCAA 62298 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 || | || || | ||| || || || |||||||| | || || | ||||| ||| Sbjct 62299 CAGCGTCTGATCTTTGCTGGGAAGCAGCTGGAAGATGGTCGTACATTGTCTGATTACAAT 62358 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 || || ||||| || || || || || ||||||||||| || || || Sbjct 62359 ATCCAGAAAGAGTCCACTCTTCACTTGGTGTTGCGTCTTCGTGGAGG 62405 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422886181862800