Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20haematobium_20[refseq_20GCF_5F000699445.1_202014-06- 09] 29,834 sequences; 375,894,156 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq11476 89.7 1e-12 seq801 87.8 4e-12 seq370 84.2 4e-11 >seq11476 Length=604 Score = 89.7 bits (98), Expect = 1e-12 Identities = 72/86 (84%), Gaps = 1/86 (1%) Strand=Plus/Minus Query 142033 CAAGTGGGCATTAAACGCATGTCTCTGTGGCGCAATGGACAGCGCGTTGGACTTCTAATC 142092 ||||||||||| || || ||| | ||||||||||||| ||||||| ||||||||| || Sbjct 545 CAAGTGGGCATAAAGCGGC-GTCCCGGTGGCGCAATGGATAGCGCGTCGGACTTCTATTC 487 Query 142093 CAAAGGTTGCGGGTTCGACCCCCGCC 142118 | ||||||||||||||| |||||| Sbjct 486 CGGAGGTTGCGGGTTCGAGTCCCGCC 461 >seq801 Length=129648 Score = 87.8 bits (96), Expect = 4e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| | |||||||||||||||| | ||||||||||| ||||||||||||||| Sbjct 46579 AGCCCGACTGGCTCAGTCGGTAGAGCATGAAACTCTTAATCTCAAGGTCGTGGGTTCGAG 46520 Query 142563 CCCCACATCGGGC 142575 ||||||||||||| Sbjct 46519 CCCCACATCGGGC 46507 >seq370 Length=303186 Score = 84.2 bits (92), Expect = 4e-11 Identities = 63/73 (86%), Gaps = 1/73 (1%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||||||||||||||||||||| | ||||| ||||||| | |||||| |||| ||| Sbjct 161666 AGCCCGGTTAGCTCAGTCGGTAGATCATCAGACTTTTAATCTGGGGGTCGT-GGTTTGAG 161608 Query 142563 CCCCACATCGGGC 142575 |||| |||||||| Sbjct 161607 CCCCCCATCGGGC 161595 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027443911310394