Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20haematobium_20[refseq_20GCF_5F000699445.1_202014-06- 09] 29,834 sequences; 375,894,156 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq1104 131 1e-25 seq26094 129 5e-25 seq2294 104 2e-17 seq52 104 2e-17 seq523 98.7 8e-16 >seq1104 Length=79538 Score = 131 bits (144), Expect = 1e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | ||| || || || | || || ||||| || || |||||||| Sbjct 62180 ATACCACCACGAAGACGCAACACCAAGTGAAGAGTGGACTCTTTCTGGATATTGTAATCA 62121 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || |||||| |||||| || || || ||||| |||| ||||||||||| || || Sbjct 62120 GACAATGTACGACCATCTTCCAGCTGCTTCCCAGCAAAGATCAGACGCTGTTGATCGGGT 62061 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || |||||||| || |||||| || | | |||| |||||| | | |||| Sbjct 62060 GGGATTCCTTCTTTATCTTGAATCTTAGCCTTCACATTCTCAATGGTGTCACTCGGTTCG 62001 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| || | |||||| || |||| || || |||||||||||||| Sbjct 62000 ACTTCCAAAGTGATCGTTTTACCAGTCAATGTCTTCACAAAAATCTGCAT 61951 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | ||| || || || | || || ||||| || || |||||||| Sbjct 61724 ATACCACCACGAAGACGCAACACCAAGTGAAGAGTGGACTCTTTCTGGATATTGTAATCA 61665 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || |||||| |||||| || || || ||||| |||| ||||||||||| || || Sbjct 61664 GACAATGTACGACCATCTTCCAGCTGCTTCCCAGCAAAGATCAGACGCTGTTGATCGGGT 61605 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || |||||||| || ||||| || | | |||| |||||| | | |||| Sbjct 61604 GGGATTCCTTCTTTATCTTGGATCTTAGCCTTCACATTCTCAATGGTGTCACTCGGTTCG 61545 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| || | |||||| || |||| || || |||||||||||||| Sbjct 61544 ACTTCCAAAGTGATCGTTTTACCAGTCAATGTCTTCACAAAAATCTGCAT 61495 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | ||| || || || | || || ||||| || || |||||||| Sbjct 61952 ATACCACCACGAAGACGCAACACCAAGTGAAGAGTGGACTCTTTCTGGATATTGTAATCA 61893 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || |||||| |||||| || || || ||||| |||| ||||||||||| || || Sbjct 61892 GACAATGTACGACCATCTTCCAGCTGCTTCCCAGCAAAGATCAGACGCTGTTGATCGGGT 61833 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || |||||||| || ||||| || | | |||| |||||| | | |||| Sbjct 61832 GGGATTCCTTCTTTATCTTGGATCTTAGCCTTCACATTCTCAATGGTGTCACTCGGTTCG 61773 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| || | |||||| || |||| || || |||||||||||||| Sbjct 61772 ACTTCCAAAGTGATCGTTTTACCAGTCAATGTCTTCACAAAAATCTGCAT 61723 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| ||||| || | ||| || || || | || || ||||| || || |||||||| Sbjct 62406 ACCTCCACGAAGACGCAACACCAAGTGAAGAGTGGACTCTTTCTGGATATTGTAATCAGA 62347 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 || |||||| |||||| || || || ||||| |||| ||||||||||| || || || Sbjct 62346 CAATGTACGACCATCTTCCAGCTGCTTCCCAGCAAAGATCAGACGCTGTTGATCGGGTGG 62287 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 || |||||||| || |||||| || | | |||| |||||| | | |||||| Sbjct 62286 GATTCCTTCTTTATCTTGAATCTTAGCCTTCACATTCTCAATGGTGTCACTCGGTTCGAC 62227 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 |||| || | |||||| || |||| || || |||||||||||||| Sbjct 62226 TTCCAAAGTGATCGTTTTACCAGTCAATGTCTTCACAAAAATCTGCAT 62179 >seq26094 Length=224 Score = 129 bits (142), Expect = 5e-25 Identities = 163/224 (73%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 114159 CCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATA 114218 ||||| || | ||| || || || | || || ||||| || || |||||||| || Sbjct 224 CCACGAAGACGCAACACCAAGTGAAGAGTGGACTCTTTCTGGATATTGTAATCAGACAAT 165 Query 114219 GTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATG 114278 |||||| |||||| || || || ||||| |||| |||||||| ||||| || ||||| Sbjct 164 GTACGACCATCTTCCAGCTGCTTCCCAGCAAAGATCAGACGCTGCTGGTCGGGTGGAATT 105 Query 114279 CCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCC 114338 |||||||| || |||||| || | | |||| |||||| | | |||||| ||| Sbjct 104 CCTTCTTTATCTTGAATCTTAGCCTTCACATTCTCAATGGTGTCACTCGGTTCGACTTCC 45 Query 114339 ACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 | || | |||||| || |||| || || |||||||||||||| Sbjct 44 AAAGTGATCGTTTTACCAGTCAATGTCTTCACAAAAATCTGCAT 1 >seq2294 Length=11734 Score = 104 bits (114), Expect = 2e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 114150 CAAATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAA 114209 || || || |||||||| | || ||| | ||||| || || ||||| || |||||||| Sbjct 1574 CACATGCCTCCACGTAGGCGCAGAACAAGATGTAAGGTTGACTCTTTCTGGATGTTGTAG 1515 Query 114210 TCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCC 114269 || || |||||| |||||| | || ||||||||| | || | ||| |||||||| Sbjct 1514 TCAGACAGAGTACGTCCATCTTCCAACTGCTTACCAGCGAATATCAAACGTTGTTGGTCA 1455 Query 114270 GGAGGAATGCCTTCTTTGTC 114289 |||||||| ||||||||||| Sbjct 1454 GGAGGAATACCTTCTTTGTC 1435 Score = 89.7 bits (98), Expect = 4e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || |||||||| | | || | ||| | || || ||||| || |||||||| || Sbjct 1343 ATTCCACCACGTAGACGAAGGACAAGATGCAGAGTCGACTCTTTCTGGATGTTGTAGTCA 1284 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || |||||| |||||| | || ||||||||| | || | ||| |||||||| ||| Sbjct 1283 GACAGAGTACGTCCATCTTCCAACTGCTTACCAGCGAATATCAAACGTTGTTGGTCAGGA 1224 Query 114273 GGAATGCCTTCTTTGTC 114289 ||||| ||||||||||| Sbjct 1223 GGAATACCTTCTTTGTC 1207 >seq52 Length=730220 Score = 104 bits (114), Expect = 2e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 114150 CAAATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAA 114209 || || || |||||||| | || ||| | ||||| || || ||||| || |||||||| Sbjct 729740 CACATGCCTCCACGTAGGCGCAGAACAAGATGTAAGGTTGACTCTTTCTGGATGTTGTAG 729681 Query 114210 TCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCC 114269 || || |||||| |||||| | || ||||||||| | || | ||| |||||||| Sbjct 729680 TCAGACAGAGTACGTCCATCTTCCAACTGCTTACCAGCGAATATCAAACGTTGTTGGTCA 729621 Query 114270 GGAGGAATGCCTTCTTTGTC 114289 |||||||| ||||||||||| Sbjct 729620 GGAGGAATACCTTCTTTGTC 729601 >seq523 Length=224339 Score = 98.7 bits (108), Expect = 8e-16 Identities = 162/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | || | ||| | || ||||| || || || || || ||| Sbjct 140025 ATACCACCACGAAGACGGAGGACAAGATGAAGTGTTGATTCCTTCTGTATATTATAGTCG 140084 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | ||| || |||||| |||||||| ||||| | || ||||| |||||||| || Sbjct 140085 GAAAGAGTTCGTCCATCTTCCAGTTGTTTGCCAGCAAAAATTAGACGTTGTTGGTCTGGT 140144 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTG-TTCAACGGTGTCGGTGGATTC 114331 || ||||||||||| || ||| ||| | ||| ||| ||| | || || | | || Sbjct 140145 GGGATGCCTTCTTTATCTTGAAT-TTTCGCCTTAACTGCTTCTATTGTATCAGCAGGCTC 140203 Query 114332 GACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | ||| | ||||| || || || || || |||||||||||||| Sbjct 140204 AACTTCTAGGGTTATAGTTTTTCCCGTAAGTGTCTTCACAAAAATCTGCAT 140254 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419981638344408