Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20haematobium_20[refseq_20GCF_5F000699445.1_202014-06- 09] 29,834 sequences; 375,894,156 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq52 82.4 6e-11 >seq52 Length=730220 Score = 82.4 bits (90), Expect = 6e-11 Identities = 86/107 (80%), Gaps = 7/107 (7%) Strand=Plus/Plus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 114391 |||||||| ||||||||||||| || |||||||| ||| | || ||||||||||||| Sbjct 182457 CATGTATTAGCTCTAGAATTACTACAGTTATCCATGTAGCATT-TACGATCTAAGGAACC 182515 Query 114392 AAAACTGATATATTGAGCCATTCGTGGT---ATCGTCTTAA-GTATG 114434 | | ||||| || ||||||||||| ||| | ||| |||| ||||| Sbjct 182516 ATAGCTGATTTAATGAGCCATTCGCGGTTTCACCGTTTTAAGGTATG 182562 Score = 82.4 bits (90), Expect = 6e-11 Identities = 86/107 (80%), Gaps = 7/107 (7%) Strand=Plus/Plus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 115588 |||||||| ||||||||||||| || |||||||| ||| | || ||||||||||||| Sbjct 182457 CATGTATTAGCTCTAGAATTACTACAGTTATCCATGTAGCATT-TACGATCTAAGGAACC 182515 Query 115589 AAAACTGATATATTGAGCCATTCGTGGT---ATCGTCTTAA-GTATG 115631 | | ||||| || ||||||||||| ||| | ||| |||| ||||| Sbjct 182516 ATAGCTGATTTAATGAGCCATTCGCGGTTTCACCGTTTTAAGGTATG 182562 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396918027366868