Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20haematobium_20[refseq_20GCF_5F000699445.1_202014-06- 09] 29,834 sequences; 375,894,156 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq1104 132 1e-25 seq523 125 2e-23 seq26094 114 3e-20 seq1010 86.0 1e-11 >seq1104 Length=79538 Score = 132 bits (146), Expect = 1e-25 Identities = 144/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| |||||||| || || | | || || || ||||| | || || || || ||| Sbjct 61685 TCTTTCTGGATATTGTAATCAGACAATGTACGACCATCTTCCAGCTGCTTCCCAGCAAAG 61626 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 ||||||||||||||| |||||||||||||||||| ||||| || || ||||| || Sbjct 61625 ATCAGACGCTGTTGATCGGGTGGGATTCCTTCTTTATCTTGGATCTTAGCCTTCACATTC 61566 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || |||| ||| ||||| | |||||||| || || |||| ||||| || Sbjct 61565 TCAATGGTGTCACTCGGTTCGACTTCCAAAGTGATCGTTTTACCAGTCAATGTCTTCACA 61506 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 61505 AAAATCTGCAT 61495 Score = 132 bits (146), Expect = 1e-25 Identities = 144/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| |||||||| || || | | || || || ||||| | || || || || ||| Sbjct 61913 TCTTTCTGGATATTGTAATCAGACAATGTACGACCATCTTCCAGCTGCTTCCCAGCAAAG 61854 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 ||||||||||||||| |||||||||||||||||| ||||| || || ||||| || Sbjct 61853 ATCAGACGCTGTTGATCGGGTGGGATTCCTTCTTTATCTTGGATCTTAGCCTTCACATTC 61794 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || |||| ||| ||||| | |||||||| || || |||| ||||| || Sbjct 61793 TCAATGGTGTCACTCGGTTCGACTTCCAAAGTGATCGTTTTACCAGTCAATGTCTTCACA 61734 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 61733 AAAATCTGCAT 61723 Score = 129 bits (142), Expect = 1e-24 Identities = 143/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| |||||||| || || | | || || || ||||| | || || || || ||| Sbjct 62141 TCTTTCTGGATATTGTAATCAGACAATGTACGACCATCTTCCAGCTGCTTCCCAGCAAAG 62082 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 ||||||||||||||| |||||||||||||||||| || || || || ||||| || Sbjct 62081 ATCAGACGCTGTTGATCGGGTGGGATTCCTTCTTTATCTTGAATCTTAGCCTTCACATTC 62022 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || |||| ||| ||||| | |||||||| || || |||| ||||| || Sbjct 62021 TCAATGGTGTCACTCGGTTCGACTTCCAAAGTGATCGTTTTACCAGTCAATGTCTTCACA 61962 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 61961 AAAATCTGCAT 61951 Score = 129 bits (142), Expect = 1e-24 Identities = 143/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| |||||||| || || | | || || || ||||| | || || || || ||| Sbjct 62369 TCTTTCTGGATATTGTAATCAGACAATGTACGACCATCTTCCAGCTGCTTCCCAGCAAAG 62310 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 ||||||||||||||| |||||||||||||||||| || || || || ||||| || Sbjct 62309 ATCAGACGCTGTTGATCGGGTGGGATTCCTTCTTTATCTTGAATCTTAGCCTTCACATTC 62250 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || |||| ||| ||||| | |||||||| || || |||| ||||| || Sbjct 62249 TCAATGGTGTCACTCGGTTCGACTTCCAAAGTGATCGTTTTACCAGTCAATGTCTTCACA 62190 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 62189 AAAATCTGCAT 62179 >seq523 Length=224339 Score = 125 bits (138), Expect = 2e-23 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | || || ||||||| || ||| || || ||||||||||||| Sbjct 140028 CCACCACGAAGACGGAGGACAAGATGAAGTGTTGATTCCTTCTGTATATTATAGTCGGAA 140087 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || ||||| ||||| | |||||| || || || || ||||| ||||| |||| Sbjct 140088 AGAGTTCGTCCATCTTCCAGTTGTTTGCCAGCAAAAATTAGACGTTGTTGGTCTGGTGGG 140147 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || ||||||||||| || |||||||| || || |||||| | ||| | || ||| Sbjct 140148 ATGCCTTCTTTATCTTGAATTTTCGCCTTAACTGCTTCTATTGTATCAGCAGGCTCAACT 140207 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || || || || || || || ||||| || || |||||||| Sbjct 140208 TCTAGGGTTATAGTTTTTCCCGTAAGTGTCTTCACAAAAATCTGCAT 140254 >seq26094 Length=224 Score = 114 bits (126), Expect = 3e-20 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| |||||||| || || | | || || || ||||| | || || || || ||| Sbjct 191 TCTTTCTGGATATTGTAATCAGACAATGTACGACCATCTTCCAGCTGCTTCCCAGCAAAG 132 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 ||||||||||| || ||| |||||||||||||| || || || || ||||| || Sbjct 131 ATCAGACGCTGCTGGTCGGGTGGAATTCCTTCTTTATCTTGAATCTTAGCCTTCACATTC 72 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || |||| ||| ||||| | |||||||| || || |||| ||||| || Sbjct 71 TCAATGGTGTCACTCGGTTCGACTTCCAAAGTGATCGTTTTACCAGTCAATGTCTTCACA 12 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 11 AAAATCTGCAT 1 >seq1010 Length=92424 Score = 86.0 bits (94), Expect = 1e-11 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 269234 TGTACAATTCGAAGAATCCCTTCGCCTTTATGGAACTAATTTCGCTCGAAGGAAAGACGA 269293 |||| |||| | ||||| || | |||||||||| || ||| ||||||||||||| | Sbjct 82038 TGTATCATTCTGACAATCCTTTTGACTTTATGGAAAATATATCGATCGAAGGAAAGACAA 81979 Query 269294 ACTTCTTCGAAAAGCGTGTCAGCGACTATCAACGTCCTGGTGTAATG 269340 |||| || || ||||| || | || ||||||||| ||||||| ||| Sbjct 81978 ACTTTTTTGAGAAGCGAGTTGGTGAATATCAACGTGCTGGTGTCATG 81932 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179203479317452