Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20haematobium_20[refseq_20GCF_5F000699445.1_202014-06- 09] 29,834 sequences; 375,894,156 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq26094 118 1e-21 seq1104 105 7e-18 >seq26094 Length=224 Score = 118 bits (130), Expect = 1e-21 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 64241 TGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGC 64300 |||| || || ||||| || || |||||||| | | || || | ||||| |||||| Sbjct 203 TGAAGAGTGGACTCTTTCTGGATATTGTAATCAGACAATGTACGACCATCTTCCAGCTGC 144 Query 64301 TTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTT 64360 || || ||| | || || |||||||||||||| |||||||||||||| ||||| || || Sbjct 143 TTCCCAGCAAAGATCAGACGCTGCTGGTCGGGTGGAATTCCTTCTTTATCTTGAATCTTA 84 Query 64361 TGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTC 64420 ||| ||| ||| | || |||| | || ||||| | ||| | || || || ||| Sbjct 83 GCCTTCACATTCTCAATGGTGTCACTCGGTTCGACTTCCAAAGTGATCGTTTTACCAGTC 24 Query 64421 AAAGTTTTTACGAAAATTTGCAT 64443 || || || || ||||| ||||| Sbjct 23 AATGTCTTCACAAAAATCTGCAT 1 >seq1104 Length=79538 Score = 105 bits (116), Expect = 7e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 64241 TGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGC 64300 |||| || || ||||| || || |||||||| | | || || | ||||| |||||| Sbjct 61697 TGAAGAGTGGACTCTTTCTGGATATTGTAATCAGACAATGTACGACCATCTTCCAGCTGC 61638 Query 64301 TTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTT 64360 || || ||| | || || ||||| || ||||| || ||||||||||| ||||| || || Sbjct 61637 TTCCCAGCAAAGATCAGACGCTGTTGATCGGGTGGGATTCCTTCTTTATCTTGGATCTTA 61578 Query 64361 TGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTC 64420 ||| ||| ||| | || |||| | || ||||| | ||| | || || || ||| Sbjct 61577 GCCTTCACATTCTCAATGGTGTCACTCGGTTCGACTTCCAAAGTGATCGTTTTACCAGTC 61518 Query 64421 AAAGTTTTTACGAAAATTTGCAT 64443 || || || || ||||| ||||| Sbjct 61517 AATGTCTTCACAAAAATCTGCAT 61495 Score = 105 bits (116), Expect = 7e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 64241 TGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGC 64300 |||| || || ||||| || || |||||||| | | || || | ||||| |||||| Sbjct 61925 TGAAGAGTGGACTCTTTCTGGATATTGTAATCAGACAATGTACGACCATCTTCCAGCTGC 61866 Query 64301 TTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTT 64360 || || ||| | || || ||||| || ||||| || ||||||||||| ||||| || || Sbjct 61865 TTCCCAGCAAAGATCAGACGCTGTTGATCGGGTGGGATTCCTTCTTTATCTTGGATCTTA 61806 Query 64361 TGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTC 64420 ||| ||| ||| | || |||| | || ||||| | ||| | || || || ||| Sbjct 61805 GCCTTCACATTCTCAATGGTGTCACTCGGTTCGACTTCCAAAGTGATCGTTTTACCAGTC 61746 Query 64421 AAAGTTTTTACGAAAATTTGCAT 64443 || || || || ||||| ||||| Sbjct 61745 AATGTCTTCACAAAAATCTGCAT 61723 Score = 105 bits (116), Expect = 7e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 64241 TGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGC 64300 |||| || || ||||| || || |||||||| | | || || | ||||| |||||| Sbjct 62153 TGAAGAGTGGACTCTTTCTGGATATTGTAATCAGACAATGTACGACCATCTTCCAGCTGC 62094 Query 64301 TTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTT 64360 || || ||| | || || ||||| || ||||| || ||||||||||| ||||| || || Sbjct 62093 TTCCCAGCAAAGATCAGACGCTGTTGATCGGGTGGGATTCCTTCTTTATCTTGAATCTTA 62034 Query 64361 TGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTC 64420 ||| ||| ||| | || |||| | || ||||| | ||| | || || || ||| Sbjct 62033 GCCTTCACATTCTCAATGGTGTCACTCGGTTCGACTTCCAAAGTGATCGTTTTACCAGTC 61974 Query 64421 AAAGTTTTTACGAAAATTTGCAT 64443 || || || || ||||| ||||| Sbjct 61973 AATGTCTTCACAAAAATCTGCAT 61951 Score = 105 bits (116), Expect = 7e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 64241 TGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGC 64300 |||| || || ||||| || || |||||||| | | || || | ||||| |||||| Sbjct 62381 TGAAGAGTGGACTCTTTCTGGATATTGTAATCAGACAATGTACGACCATCTTCCAGCTGC 62322 Query 64301 TTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTT 64360 || || ||| | || || ||||| || ||||| || ||||||||||| ||||| || || Sbjct 62321 TTCCCAGCAAAGATCAGACGCTGTTGATCGGGTGGGATTCCTTCTTTATCTTGAATCTTA 62262 Query 64361 TGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTC 64420 ||| ||| ||| | || |||| | || ||||| | ||| | || || || ||| Sbjct 62261 GCCTTCACATTCTCAATGGTGTCACTCGGTTCGACTTCCAAAGTGATCGTTTTACCAGTC 62202 Query 64421 AAAGTTTTTACGAAAATTTGCAT 64443 || || || || ||||| ||||| Sbjct 62201 AATGTCTTCACAAAAATCTGCAT 62179 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499458469962960