Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20haematobium_20[refseq_20GCF_5F000699445.1_202014-06- 09] 29,834 sequences; 375,894,156 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq26094 96.9 2e-15 seq523 93.3 3e-14 >seq26094 Length=224 Score = 96.9 bits (106), Expect = 2e-15 Identities = 151/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 14965 AAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCG--CGT 15022 || || || ||||| || || ||||| || || |||||||| || ||| || | | Sbjct 212 AACACCAAGTGAAGAGTGGACTCTTTCTGGATATTGTAATCA--GACAATGTACGACCAT 155 Query 15023 CTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGT 15082 |||| | || || ||||| | |||| |||||| |||||| |||||||||||| || | Sbjct 154 CTTCCAGCTGCTTCCCAGCAAAGATCAGACGCTGCTGGTCGGGTGGAATTCCTTCTTTAT 95 Query 15083 CACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGG 15142 | ||| || || ||| | || || || || || ||| || || || || || | Sbjct 94 CTTGAATCTTAGCCTTCACATTCTCAATGGTGTCACTCGGTTCGACTTCCAAAGTGATCG 35 Query 15143 TTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 ||||||| |||| || || |||||||| ||||| Sbjct 34 TTTTACCAGTCAATGTCTTCACAAAAATCTGCAT 1 >seq523 Length=224339 Score = 93.3 bits (102), Expect = 3e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTG 15032 |||||| || || || || ||||| || || ||| ||| ||| | ||||| | ||| Sbjct 140051 ATGAAGTGTTGATTCCTTCTGTATATTATAGTCGGAAAGAGTTCGTCCATCTTCCAGTTG 140110 Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092 ||||||||| | || | ||| |||||||| ||| || ||||| || || |||||| Sbjct 140111 TTTGCCAGCAAAAATTAGACGTTGTTGGTCTGGTGGGATGCCTTCTTTATCTTGAATTTT 140170 Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152 || || |||||| ||||| | || || |||| ||| || ||||| || || Sbjct 140171 CGCCTTAACTGCTTCTATTGTATCAGCAGGCTCAACTTCTAGGGTTATAGTTTTTCCCGT 140230 Query 15153 CAGAGTTTTTACAAAAATTTGCAT 15176 || || || |||||||| ||||| Sbjct 140231 AAGTGTCTTCACAAAAATCTGCAT 140254 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357262051598690