Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20haematobium_20[refseq_20GCF_5F000699445.1_202014-06- 09] 29,834 sequences; 375,894,156 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq523 127 2e-24 seq26094 87.8 2e-12 seq2294 82.4 7e-11 seq52 82.4 7e-11 >seq523 Length=224339 Score = 127 bits (140), Expect = 2e-24 Identities = 168/233 (72%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 45109 TTATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAAT 45168 |||| || || || || | | || ||||| || ||||||||||| || |||||||| | Sbjct 140023 TTATACCACCACGAAGACGGAGGACAAGATGAAGTGTTGATTCCTTCTGTATATTATAGT 140082 Query 45169 CGCTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCG 45228 || | ||| ||| |||| |||||| || || | || | ||||| ||||| | Sbjct 140083 CGGAAAGAGTTCGTCCATCTTCCAGTTGTTTGCCAGCAAAAATTAGACGTTGTTGGTCTG 140142 Query 45229 GCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACT 45288 | || ||||||||||||||||||||||| || | ||||||| || || | || || Sbjct 140143 GTGGGATGCCTTCTTTATCTTGAATTTTCGCCTTAACTGCTTCTATTGTATCAGCAGGCT 140202 Query 45289 CGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 | ||||| || || | ||||| || || || || || |||||||| |||||| Sbjct 140203 CAACTTCTAGGGTTATAGTTTTTCCCGTAAGTGTCTTCACAAAAATCTGCATC 140255 >seq26094 Length=224 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/226 (69%), Gaps = 4/226 (2%) Strand=Plus/Minus Query 45117 CCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACG 45176 || || || | |||||| | || || || || || || |||||||| ||||| ||| Sbjct 224 CCACGAAGACGCAACACCAAGTGAAGAGTGGACTCTTTCTGGATATTGTAATCA--GACA 167 Query 45177 GTTTTAGA--ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAA 45234 | | || ||| |||| || || || || | |||| || |||||||| || |||| Sbjct 166 ATGTACGACCATCTTCCAGCTGCTTCCCAGCAAAGATCAGACGCTGCTGGTCGGGTGGAA 107 Query 45235 TGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTT 45294 | ||||||||||||||||| || || | || | |||||| | ||||||| Sbjct 106 TTCCTTCTTTATCTTGAATCTTAGCCTTCACATTCTCAATGGTGTCACTCGGTTCGACTT 47 Query 45295 CGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 | | ||| | |||||| || || | || || |||||||| ||||| Sbjct 46 CCAAAGTGATCGTTTTACCAGTCAATGTCTTCACAAAAATCTGCAT 1 >seq2294 Length=11734 Score = 82.4 bits (90), Expect = 7e-11 Identities = 108/148 (73%), Gaps = 4/148 (3%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 ||||| || || || | | || |||||||| || || || || ||||| || || || Sbjct 1343 ATTCCACCACGTAGACGAAGGACAAGATGCAGAGTCGACTCTTTCTGGATGTTGTAGTCA 1284 Query 45171 CTGACGGTTTTAGA--ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCG 45228 ||| | | | ||| ||||| || || || ||| ||||||| ||||| ||||| | Sbjct 1283 --GACAGAGTACGTCCATCTTCCAACTGCTTACCAGCGAATATCAAACGTTGTTGGTCAG 1226 Query 45229 GCGGAATGCCTTCTTTATCTTGAATTTT 45256 | ||||| |||||||| ||||||||||| Sbjct 1225 GAGGAATACCTTCTTTGTCTTGAATTTT 1198 Score = 82.4 bits (90), Expect = 7e-11 Identities = 108/148 (73%), Gaps = 4/148 (3%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| || || | || || ||||| | ||||| || || ||||| || || || Sbjct 1571 ATGCCTCCACGTAGGCGCAGAACAAGATGTAAGGTTGACTCTTTCTGGATGTTGTAGTCA 1512 Query 45171 CTGACGGTTTTAGA--ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCG 45228 ||| | | | ||| ||||| || || || ||| ||||||| ||||| ||||| | Sbjct 1511 --GACAGAGTACGTCCATCTTCCAACTGCTTACCAGCGAATATCAAACGTTGTTGGTCAG 1454 Query 45229 GCGGAATGCCTTCTTTATCTTGAATTTT 45256 | ||||| |||||||| ||||||||||| Sbjct 1453 GAGGAATACCTTCTTTGTCTTGAATTTT 1426 >seq52 Length=730220 Score = 82.4 bits (90), Expect = 7e-11 Identities = 108/148 (73%), Gaps = 4/148 (3%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| || || | || || ||||| | ||||| || || ||||| || || || Sbjct 729737 ATGCCTCCACGTAGGCGCAGAACAAGATGTAAGGTTGACTCTTTCTGGATGTTGTAGTCA 729678 Query 45171 CTGACGGTTTTAGA--ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCG 45228 ||| | | | ||| ||||| || || || ||| ||||||| ||||| ||||| | Sbjct 729677 --GACAGAGTACGTCCATCTTCCAACTGCTTACCAGCGAATATCAAACGTTGTTGGTCAG 729620 Query 45229 GCGGAATGCCTTCTTTATCTTGAATTTT 45256 | ||||| |||||||| ||||||||||| Sbjct 729619 GAGGAATACCTTCTTTGTCTTGAATTTT 729592 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451834636706640