Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20haematobium_20[refseq_20GCF_5F000699445.1_202014-06- 09] 29,834 sequences; 375,894,156 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq26094 93.3 5e-14 seq1104 87.8 2e-12 seq2294 82.4 9e-11 >seq26094 Length=224 Score = 93.3 bits (102), Expect = 5e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||||||||||| || | || ||| || ||||||||||| || || | || || | Sbjct 216 ACGCAACACCAAGTGAAGAGTGGACTCTTTCTGGATATTGTAATCAGACAATGTACGACC 157 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 || || |||||||| || || || |||| ||||||||||||| || | | || || Sbjct 156 ATCTTCCAGCTGCTTCCCAGCAAAGATCAGACGCTGCTGGTCGGGTGGAATTCCTTCTTT 97 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557 || ||||| ||| | || | | ||||| |||| ||| || |||| ||||| Sbjct 96 ATCTTGAATCTTAGCCTTCACATTCTCAATGGTGTCACTCGGTTCGACTTCCAAAGTGAT 37 Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||||| || |||| || || ||||| || ||||| Sbjct 36 CGTTTTACCAGTCAATGTCTTCACAAAAATCTGCAT 1 >seq1104 Length=79538 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||||||||||| || | || ||| || ||||||||||| || || | || || | Sbjct 61710 ACGCAACACCAAGTGAAGAGTGGACTCTTTCTGGATATTGTAATCAGACAATGTACGACC 61651 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 || || |||||||| || || || |||| ||||| || |||| || | | || || Sbjct 61650 ATCTTCCAGCTGCTTCCCAGCAAAGATCAGACGCTGTTGATCGGGTGGGATTCCTTCTTT 61591 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557 || |||||| ||| | || | | ||||| |||| ||| || |||| ||||| Sbjct 61590 ATCTTGGATCTTAGCCTTCACATTCTCAATGGTGTCACTCGGTTCGACTTCCAAAGTGAT 61531 Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||||| || |||| || || ||||| || ||||| Sbjct 61530 CGTTTTACCAGTCAATGTCTTCACAAAAATCTGCAT 61495 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||||||||||| || | || ||| || ||||||||||| || || | || || | Sbjct 61938 ACGCAACACCAAGTGAAGAGTGGACTCTTTCTGGATATTGTAATCAGACAATGTACGACC 61879 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 || || |||||||| || || || |||| ||||| || |||| || | | || || Sbjct 61878 ATCTTCCAGCTGCTTCCCAGCAAAGATCAGACGCTGTTGATCGGGTGGGATTCCTTCTTT 61819 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557 || |||||| ||| | || | | ||||| |||| ||| || |||| ||||| Sbjct 61818 ATCTTGGATCTTAGCCTTCACATTCTCAATGGTGTCACTCGGTTCGACTTCCAAAGTGAT 61759 Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||||| || |||| || || ||||| || ||||| Sbjct 61758 CGTTTTACCAGTCAATGTCTTCACAAAAATCTGCAT 61723 Score = 86.0 bits (94), Expect = 7e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 ||||| | | ||||||||||| || | || ||| || ||||||||||| || || Sbjct 62405 CCTCCACGAAGACGCAACACCAAGTGAAGAGTGGACTCTTTCTGGATATTGTAATCAGAC 62346 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 | || || | || || |||||||| || || || |||| ||||| || |||| || Sbjct 62345 AATGTACGACCATCTTCCAGCTGCTTCCCAGCAAAGATCAGACGCTGTTGATCGGGTGGG 62286 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | | || || || ||||| ||| | || | | ||||| |||| ||| || Sbjct 62285 ATTCCTTCTTTATCTTGAATCTTAGCCTTCACATTCTCAATGGTGTCACTCGGTTCGACT 62226 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| ||||| ||||| || |||| || || ||||| || ||||| Sbjct 62225 TCCAAAGTGATCGTTTTACCAGTCAATGTCTTCACAAAAATCTGCAT 62179 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||||||||||| || | || ||| || ||||||||||| || || | || || | Sbjct 62166 ACGCAACACCAAGTGAAGAGTGGACTCTTTCTGGATATTGTAATCAGACAATGTACGACC 62107 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 || || |||||||| || || || |||| ||||| || |||| || | | || || Sbjct 62106 ATCTTCCAGCTGCTTCCCAGCAAAGATCAGACGCTGTTGATCGGGTGGGATTCCTTCTTT 62047 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557 || ||||| ||| | || | | ||||| |||| ||| || |||| ||||| Sbjct 62046 ATCTTGAATCTTAGCCTTCACATTCTCAATGGTGTCACTCGGTTCGACTTCCAAAGTGAT 61987 Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||||| || |||| || || ||||| || ||||| Sbjct 61986 CGTTTTACCAGTCAATGTCTTCACAAAAATCTGCAT 61951 >seq2294 Length=11734 Score = 82.4 bits (90), Expect = 9e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 ||||||| | || |||| || ||||| || || ||| || ||||| |||||||| | Sbjct 1570 TGCCTCCACGTAGGCGCAGAACAAGATGTAAGGTTGACTCTTTCTGGATGTTGTAGTCAG 1511 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | ||||| || | || || | |||||| || ||||||||||| || || ||||| | | Sbjct 1510 ACAGAGTACGTCCATCTTCCAACTGCTTACCAGCGAATATCAAACGTTGTTGGTCAGGAG 1451 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | | || ||||| || || || | || | | || || || | || | Sbjct 1450 GAATACCTTCTTTGTCTTGAATTTTAGCTTTCACATTCTCAATAGTATCACTAGGCTCAA 1391 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 | || | || || || || || | || ||| || ||||||||||||||| Sbjct 1390 CCTCTAACGGAATCGTCTTACCAGGCAACGTCTTCACAAAGATTTGCATT 1341 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565027608469680