Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20haematobium_20[refseq_20GCF_5F000699445.1_202014-06- 09] 29,834 sequences; 375,894,156 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq2017 158 5e-33 seq523 150 7e-31 seq4589 141 4e-28 seq1104 116 1e-20 seq26094 113 2e-19 seq2294 96.9 1e-14 seq1115 91.5 6e-13 >seq2017 Length=18414 Score = 158 bits (174), Expect = 5e-33 Identities = 257/367 (70%), Gaps = 10/367 (3%) Strand=Plus/Plus Query 451232 AAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCA 451291 || || ||||| || || || || || ||||||| | || |||||||| || Sbjct 4430 AAGACGTTTGCCCCAGAGGAGATCTCTGCTATGGTGTTAGGGAAGATGAAAGAGTTTGCT 4489 Query 451292 GAACAATATATTGGTTCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAAT 451351 ||| ||| |||| ||||| |||||||| | ||||| || || ||||| || Sbjct 4490 GAATCCTATCTTGGCAAAAAGGTTACCCATGCAGTAGTCACTGTCCCAGCCTATTTTAAC 4549 Query 451352 GATGCACAACGGCAAGCAACTAAAGATGCAGG-ACATATTGCTGGTTTAAATGTTCTTCG 451410 |||||||| || || ||||| |||||||| || ||| ||||||||||| ||| | || || Sbjct 4550 GATGCACAGCGCCAGGCAACCAAAGATGCTGGCACA-ATTGCTGGTTTGAATATACTCCG 4608 Query 451411 AATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAAC 451470 || ||||||||||| || || ||||| | || || || |||| | |||||| Sbjct 4609 GATCATTAATGAACCAACTGCTGCTGCGATTGCTTACGGTCTAG-------ATAAGAAAG 4661 Query 451471 A-GAAGaaaaaaaTATTTTAGTATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTAC 451529 | | || || |||||| | |||||||| |||| || || ||| || ||| ||| Sbjct 4662 ATGGTGAGAAGAATATTCTGATATTTGATCTTGGAGGTGGTACTTTCGACGTTTCACTAC 4721 Query 451530 TTTCAATTGAAGATGGGGTATTTGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAG 451589 || ||||||| | || || || |||||| || || |||||||| || ||||| || | Sbjct 4722 TTACAATTGAGAACGGTGTGTTCGAAGTAGTTGCTACAAATGGTGACACACATCTTGGTG 4781 Query 451590 GTGAAGA 451596 | || || Sbjct 4782 GAGAGGA 4788 >seq523 Length=224339 Score = 150 bits (166), Expect = 7e-31 Identities = 155/203 (76%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | ||||| || || ||||| || || |||||||| || || || ||||| | || Sbjct 140254 ATGCAGATTTTTGTGAAGACACTTACGGGAAAAACTATAACCCTAGAAGTTGAGCCTGCT 140195 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| || ||||| |||| |||||||||||||| ||||| || || || || ||| Sbjct 140194 GATACAATAGAAGCAGTTAAGGCGAAAATTCAAGATAAAGAAGGCATCCCACCAGACCAA 140135 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 |||||| ||||||| | || |||||||| ||||||||| ||||| | | || |||||| Sbjct 140134 CAACGTCTAATTTTTGCTGGCAAACAACTGGAAGATGGACGAACTCTTTCCGACTATAAT 140075 Query 391230 ATTGATAAGGATGCAACACTTCA 391252 || | ||||| |||||||||| Sbjct 140074 ATACAGAAGGAATCAACACTTCA 140052 >seq4589 Length=1669 Score = 141 bits (156), Expect = 4e-28 Identities = 268/392 (68%), Gaps = 7/392 (2%) Strand=Plus/Minus Query 451217 TATAAAGGTGAAACTAAAACTTTTGCTCCT--GAAGAAATTTCATCTATGGTTCTTACTA 451274 ||||| ||||| | |||| || | |||| || || ||||| || ||||| | || | Sbjct 516 TATAAGGGTGAGA--AAAAGTTGTTCTCCGCGGAGGAGATTTCGTCGATGGTGTTGACGA 459 Query 451275 AAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTAATTACTG 451334 ||||||| || || ||| ||| | || |||| | ||| || || || || | Sbjct 458 AAATGAAGGAGGTTGCTGAAAGTTATTTGGGCAGGACAGTAAGTGACGCGGTTATAACAG 399 Query 451335 TTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATTGCTG 451394 |||| ||||| |||||||| ||||| |||||||| ||||||||||| ||| |||| Sbjct 398 TTCCTGCTTACTTCAATGACAGTCAACGTCAAGCAACGAAAGATGCAGGTGCTATAGCTG 339 Query 451395 GTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGGACTAG 451454 || | ||||| | |||| |||||||| || ||||| || || | || ||||| ||| Sbjct 338 GTCTTAATGTGTTGAGAATCATTAATGAGCCGACAGCTGCGGCAATTGCCTATGGTTTAG 279 Query 451455 GAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTTGGTGGAGGAACTC 451514 || || | | || ||| | || |||||||||| ||||| || || Sbjct 278 ACAA---GAAGGTTGGTGGTGAGCGTAATGTGTTGATATTTGATTTGGGTGGTGGTACAT 222 Query 451515 ATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAGGCAACCAATGGTG 451574 |||| || | | ||||||| ||||| |||| || || ||| | || ||||| Sbjct 221 TTGATGTGTCCATCTTGACAATTGAGGATGGTATATTCGAGGTGAAGTCTACTGCTGGTG 162 Query 451575 ATACTCATCTAGGAGGTGAAGATATTGATAAT 451606 |||| || | |||||||||||| |||| ||| Sbjct 161 ATACACACTTGGGAGGTGAAGATTTTGACAAT 130 >seq1104 Length=79538 Score = 116 bits (128), Expect = 1e-20 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | ||||| || || ||| ||||||||||||| || ||| | || || ||| | | Sbjct 61951 ATGCAGATTTTTGTGAAGACATTGACTGGTAAAACGATCACTTTGGAAGTCGAACCGAGT 62010 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | |||||| | | || || ||||||||||| |||||||| || || |||||| Sbjct 62011 GACACCATTGAGAATGTGAAGGCTAAGATTCAAGATAAAGAAGGAATCCCACCCGATCAA 62070 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || ||| | || || | ||||| || || |||||||| | || ||| | ||||| ||| Sbjct 62071 CAGCGTCTGATCTTTGCTGGGAAGCAGCTGGAAGATGGTCGTACATTGTCTGATTACAAT 62130 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATT 391261 || | || || | || |||||||| || || Sbjct 62131 ATCCAGAAAGAGTCCACTCTTCACTTGGTGTT 62162 Score = 116 bits (128), Expect = 1e-20 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | ||||| || || ||| ||||||||||||| || ||| | || || ||| | | Sbjct 62179 ATGCAGATTTTTGTGAAGACATTGACTGGTAAAACGATCACTTTGGAAGTCGAACCGAGT 62238 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | |||||| | | || || ||||||||||| |||||||| || || |||||| Sbjct 62239 GACACCATTGAGAATGTGAAGGCTAAGATTCAAGATAAAGAAGGAATCCCACCCGATCAA 62298 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || ||| | || || | ||||| || || |||||||| | || ||| | ||||| ||| Sbjct 62299 CAGCGTCTGATCTTTGCTGGGAAGCAGCTGGAAGATGGTCGTACATTGTCTGATTACAAT 62358 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATT 391261 || | || || | || |||||||| || || Sbjct 62359 ATCCAGAAAGAGTCCACTCTTCACTTGGTGTT 62390 Score = 113 bits (124), Expect = 2e-19 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | ||||| || || ||| ||||||||||||| || ||| | || || ||| | | Sbjct 61495 ATGCAGATTTTTGTGAAGACATTGACTGGTAAAACGATCACTTTGGAAGTCGAACCGAGT 61554 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | |||||| | | || || || |||||||| |||||||| || || |||||| Sbjct 61555 GACACCATTGAGAATGTGAAGGCTAAGATCCAAGATAAAGAAGGAATCCCACCCGATCAA 61614 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || ||| | || || | ||||| || || |||||||| | || ||| | ||||| ||| Sbjct 61615 CAGCGTCTGATCTTTGCTGGGAAGCAGCTGGAAGATGGTCGTACATTGTCTGATTACAAT 61674 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATT 391261 || | || || | || |||||||| || || Sbjct 61675 ATCCAGAAAGAGTCCACTCTTCACTTGGTGTT 61706 Score = 113 bits (124), Expect = 2e-19 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | ||||| || || ||| ||||||||||||| || ||| | || || ||| | | Sbjct 61723 ATGCAGATTTTTGTGAAGACATTGACTGGTAAAACGATCACTTTGGAAGTCGAACCGAGT 61782 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | |||||| | | || || || |||||||| |||||||| || || |||||| Sbjct 61783 GACACCATTGAGAATGTGAAGGCTAAGATCCAAGATAAAGAAGGAATCCCACCCGATCAA 61842 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || ||| | || || | ||||| || || |||||||| | || ||| | ||||| ||| Sbjct 61843 CAGCGTCTGATCTTTGCTGGGAAGCAGCTGGAAGATGGTCGTACATTGTCTGATTACAAT 61902 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATT 391261 || | || || | || |||||||| || || Sbjct 61903 ATCCAGAAAGAGTCCACTCTTCACTTGGTGTT 61934 >seq26094 Length=224 Score = 113 bits (124), Expect = 2e-19 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | ||||| || || ||| ||||||||||||| || ||| | || || ||| | | Sbjct 1 ATGCAGATTTTTGTGAAGACATTGACTGGTAAAACGATCACTTTGGAAGTCGAACCGAGT 60 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | |||||| | | || || ||||||||||| ||||||||||| || || || Sbjct 61 GACACCATTGAGAATGTGAAGGCTAAGATTCAAGATAAAGAAGGAATTCCACCCGACCAG 120 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || ||| | || || | ||||| || || |||||||| | || ||| | ||||| ||| Sbjct 121 CAGCGTCTGATCTTTGCTGGGAAGCAGCTGGAAGATGGTCGTACATTGTCTGATTACAAT 180 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATT 391261 || | || || | || |||||||| || || Sbjct 181 ATCCAGAAAGAGTCCACTCTTCACTTGGTGTT 212 >seq2294 Length=11734 Score = 96.9 bits (106), Expect = 1e-14 Identities = 131/183 (72%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | || || || || || || ||||||| || ||| | | || ||||| | Sbjct 1341 AATGCAAATCTTTGTGAAGACGTTGCCTGGTAAGACGATTCCGTTAGAGGTTGAGCCTAG 1400 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 ||||| ||||| | | ||| ||||||||||| || ||||| ||||||||||| || Sbjct 1401 TGATACTATTGAGAATGTGAAAGCTAAAATTCAAGACAAAGAAGGTATTCCTCCTGACCA 1460 Query 391169 ACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAA 391228 ||||||||| || ||| | || || || | ||||||||| | ||| || | || || || Sbjct 1461 ACAACGTTTGATATTCGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGACTACAA 1520 Query 391229 TAT 391231 || Sbjct 1521 CAT 1523 >seq1115 Length=78361 Score = 91.5 bits (100), Expect = 6e-13 Identities = 98/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 248487 ACATGGACAAAAAGGAACAGTTGGTATTACTTTGCCACAAAGAGATATGCCTTTCACATC 248546 ||| ||||| ||||| || ||| ||| || | ||| ||||||||| ||||||| Sbjct 33479 ACACGGACAGAAAGGTACTTGTGGAATTCGTTATCGTCAAGAAGATATGCCATTCACATG 33538 Query 248547 AGAAGGTATGACTCCAGATTTAATTTTCAATCCACATGGTATGCCTACACGTATGACTAT 248606 ||||| || || |||||| | ||| | |||||||| | ||| |||| ||||||||||| Sbjct 33539 TGAAGGAATTACACCAGATATTATTATTAATCCACACGCTATTCCTAGTCGTATGACTAT 33598 Query 248607 GGGACAATTA 248616 ||||| ||| Sbjct 33599 TGGACATTTA 33608 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1974963185346072