Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20haematobium_20[refseq_20GCF_5F000699445.1_202014-06- 09] 29,834 sequences; 375,894,156 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq4589 253 2e-61 seq2017 158 9e-33 seq6726 114 1e-19 >seq4589 Length=1669 Score = 253 bits (280), Expect = 2e-61 Identities = 548/812 (67%), Gaps = 16/812 (2%) Strand=Plus/Plus Query 517909 TGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTGATT 517968 || |||||| ||||||||||||||||| || || | || || || ||| |||| Sbjct 16 TGTACGTTTCGCACGTTCACATGCTGTTCTCAGGCGACGCAATGCAC--GCTTATTGTCA 73 Query 517969 CAAATCTGTTT--TATATTTTCTCTTGAAATCTTCAACACACCATGTTACA--AGACGAT 518024 | ||| | ||| || |||| ||| ||| |||| ||| | || | || ||||||| Sbjct 74 CGAATGTCTTTACTAAATTTCTTCTGGAACTCTTTCACAAAG--TGATCCACCAGACGAT 131 Query 518025 TATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTC 518084 | |||||||||||||||||||| | |||| || | |||| | || | ||| | | Sbjct 132 TGTCAAAATCTTCACCTCCCAAGTGTGTATCACCAGCAGTAGACTTCACCTCGAATATAC 191 Query 518085 CATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTA 518144 |||| |||| | ||| | | |||||| || |||||||||| |||||| || | | Sbjct 192 CATCCTCAATTGTCAAGATGGACACATCAAATGTACCACCACCCAAATCAAATATCAACA 251 Query 518145 CATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTT 518204 |||| || | || || || | |||||| |||| || ||||| || || | Sbjct 252 CATTACGCTCACCACCAACCTTCTTGTCTAAACCATAGGCAATTGCCGCAGCTGTCGGCT 311 Query 518205 CATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTC 518264 ||||||| |||||||| |||||||||||||| || ||||||||||| || ||||| | Sbjct 312 CATTAATGATTCTCAACACATTAAGACCAGCTATAGCACCTGCATCTTTCGTTGCTTGAC 371 Query 518265 TTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACT-TCTTTACCA 518323 ||| || || || || |||||||| || ||||| || ||| ||||| || | ||| Sbjct 372 GTTGACTGTCATTGAAGTAAGCAGGAACTGTTATAACCGCGTCACTTACTGTCCTGCCCA 431 Query 518324 ATATAAGCGCTT---GCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCT 518380 | |||| ||| || | |||||||| | || | ||| || ||||| | || Sbjct 432 A-ATAA---CTTTCAGCAACCTCCTTCATTTTCGTCAACACCATCGACGAAATCTCCTCC 487 Query 518381 GGGGAATATTGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACA 518440 | ||| | ||| ||| | ||| || || | | ||| ||| || Sbjct 488 GCGGAGAACAACTTTTTCTCACCCTTATACTCAACACGAATCTTCAGCTTACCACCGACT 547 Query 518441 TTAATAACTTTAAATGGCCAGTATTTCATATCTGATTGAACACTTTGGTCATTAAAATCT 518500 | || || | ||||||||| | |||||||| ||||| | | |||| ||| Sbjct 548 TGAACCACCTCAAATGGCCAATGCTTCATATCACTCTGAACTGATGGATCATCGAAACGA 607 Query 518501 CTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATAT 518560 | ||| |||| || || |||||||| | ||||| ||||||||||| || |||| | Sbjct 608 CGACCGATTAGCCGCTTCGCATCAAACACTGTATTTGTTGGATTAATAGCCACTTGGTTC 667 Query 518561 TTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTG 518620 || ||| |||| ||||| | | | || | ||||| || | ||||| || || || Sbjct 668 TTCGCTCCATCACCAATTAAACGCTCAGCATCTGTGAACGCCACATAACTCGGTGTCGTT 727 Query 518621 CGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAA 518680 | ||||| |||||||| ||||| || || ||||| |||| || | ||||| ||||| Sbjct 728 CTGTTACCCTGATCATTGGCAATTATCTCCACTTTGCCATGCTGGAAAACACCAACACAC 787 Query 518681 CTAAAAGTTGTTCCTAAATCAATACCAATAGC 518712 | | ||||| || | ||| || ||||| || Sbjct 788 GAATATGTTGTACCAAGATCGATCCCAATGGC 819 >seq2017 Length=18414 Score = 158 bits (174), Expect = 9e-33 Identities = 381/571 (67%), Gaps = 18/571 (3%) Strand=Plus/Minus Query 518117 GTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGA 518176 || ||||| || | |||||| || || | |||| | || |||| | ||||| ||| Sbjct 4704 GTACCACCTCCAAGATCAAATATCAGAATATTCTTCTCACCATCTT---TCTTATCTAGA 4648 Query 518177 CCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCA 518236 || || |||| ||||||||||||||||||||||| || | | | ||| | ||||||| Sbjct 4647 CCGTAAGCAATCGCAGCAGCAGTTGGTTCATTAATGATCCGGAGTATATTCAAACCAGCA 4588 Query 518237 ATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTA 518296 ||| | || |||||||| || || || | |||| |||||||||||| || || ||||| Sbjct 4587 ATTGTGCCAGCATCTTTGGTTGCCTGGCGCTGTGCATCGTTAAAATAGGCTGGGACAGTG 4528 Query 518297 ATAACGGCATCAGTTACTTCTTTACCAATATAAGCGCTTGCCGTTTGTTTCATTTTACTT 518356 | || |||| || || | ||| |||| ||| | || | |||||| || | | Sbjct 4527 ACTACTGCATGGGTAACCTTTTTGCCAAGATAGGATTCAGCAAACTCTTTCATCTTCCCT 4468 Query 518357 AAAATCATTGATGAAATTTGTTCTGGGGAATATTGCTTGGATTCATTTTGAT-----ATG 518411 || | ||| | || || | ||||||| | | |||| ||| |||| || Sbjct 4467 AACACCATAGCAGAGATCTCCTCTGGGGCAAACGTCTTGACTTC----TGATCCAACGTG 4412 Query 518412 ATACTTCAAAATATGGTTTATTACCAACATTAATAACTTTAAATGGCCAGTATTTCATAT 518471 | ||||| | ||||||||| || ||||| ||| ||| || | | | || | Sbjct 4411 A-ACTTCGATATATGGTTTGTTCTTTTTATTAACAACGGAAAAAGGGTAATGAGTTATGT 4353 Query 518472 CTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGTTTTGCATCAAAAATAG 518531 | ||| ||| || |||| || | || ||||| | || || | || ||||| | Sbjct 4352 CATTTTGTACAGTTGATTCATCGAACTTCCTTCCAATAAGTCTCTTGACGTCGAAAATTG 4293 Query 518532 TATTGGTTGGA-TTAATTGCAGCTTGATATTTGGCTGCATCTCCAATCA---GATGTTCT 518587 | || |||| || || |||| || | ||| || ||||| ||||| | | | || Sbjct 4292 TGTTTTCTGGATTTGATGTCAGC-TGGTTTTTAGCAGCATCCCCAATTAATCGCTCGCCT 4234 Query 518588 GTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAATAATT 518647 | || |||| || ||||| ||||| | | ||||| ||||||||||||||||| Sbjct 4233 TCCGGAGTGAATGCTACGTATGAGGGAGTAATCCTGTTACCCTGATCATTCGCAATAATC 4174 Query 518648 TCAACTTTACCATTTTGCCATACACCTACAC 518678 |||||| || ||| ||||||| |||| Sbjct 4173 TCAACTCGGCCTCCTTGAAATACACCAACAC 4143 Score = 87.8 bits (96), Expect = 1e-11 Identities = 99/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 322239 CTAAACCGTATGCAAGAGCTGCTGCAGTTGGTTCATTAATTATTTTAAGAACATCTAAAC 322298 ||| |||||| |||| || || ||||||||||||||||| || || | || |||| Sbjct 4652 CTAGACCGTAAGCAATCGCAGCAGCAGTTGGTTCATTAATGATCCGGAGTATATTCAAAC 4593 Query 322299 CCGCAATTTTAGCAGAATCAAGAGTTGCTTGTCTCTGTGCGTCATTAAAATATGCTGGTA 322358 | |||||| | ||| ||| ||||| || | |||||| || |||||||| ||||| | Sbjct 4592 CAGCAATTGTGCCAGCATCTTTGGTTGCCTGGCGCTGTGCATCGTTAAAATAGGCTGGGA 4533 Query 322359 CAGTAATAACTGC 322371 |||| | ||||| Sbjct 4532 CAGTGACTACTGC 4520 >seq6726 Length=1151 Score = 114 bits (126), Expect = 1e-19 Identities = 352/537 (66%), Gaps = 8/537 (1%) Strand=Plus/Minus Query 517250 TTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATT 517309 || ||| | |||| || || |||||||| || || || | |||||| || || ||||| Sbjct 679 TTGTCAACAGCAGATACGTTCAGAATACCGTTCGCGTCTATATCAAACGTCACCTCAATC 620 Query 517310 TGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTA 517369 || || || | ||||||||||||| ||| | | || | || || ||| Sbjct 619 TGGGGAGTACCACGAGGAGCAGGTGGGATACCTGAGAGTTCGAACTTGCCAAGCAGATTG 560 Query 517370 TTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTA 517429 || || || || | || ||||||||||| | |||||| || ||| || || Sbjct 559 TTGTCCTTCGTCAGAGCACGCTCACCCTCGAACACCTGGATAAGCACACCAGGCTGGTTG 500 Query 517430 TCTGAATAAGTTGTAAATACTCTGGATTTT--TTACAAGGAATTGTTGTGTTTCTATCAA 517487 || || || || || || | | || | | || |||||||| || || | | || Sbjct 499 TCCGAGTACGTCGTGAA--CGTTTGAGTCTGCTTCGTCGGAATTGTCGTATTACGCTTAA 442 Query 517488 TAATATTGGTCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAA 517547 | | | ||||| | |||||| || ||||| | ||| || || | |||| || |||| Sbjct 441 TCAGAGCCGTCATTACACCACCAGCCGTTTCAAGACCCAGTGACAATGGAGCCACGTCAA 382 Query 517548 CTAGGACAATATTTTGAAGTTTTTCATCAGTT-TGACCAACAAGAATAGCTGCTTGAATA 517606 | | | | || | ||| || || | |||| ||||||||||| || | | Sbjct 381 GCAACAGCAAGTCCTGCACAGCCTCA-CACTTGTCACCACTTAGAATAGCTGCCTGCACA 323 Query 517607 GCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTG 517666 || |||||||| || ||||||||||| ||||||| || || || | | || || ||| Sbjct 322 GCTGCACCATAAGCCACAGCTTCATCCGGATTAATAGATTTGTTCAACTCCTTCCCGTTG 263 Query 517667 AAAAAAT-TTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATAC 517725 || || | || || | || | |||||||| ||||||| || || ||||| || || Sbjct 262 AAGAAGTCCTGCAACAGCTTCT-GCACCTTAGGGATACGAGTGGAACCACCAACCAACAC 204 Query 517726 AATTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGG 517782 ||||| || | ||| | ||||||| || | ||| ||| | || ||||| || Sbjct 203 TATTTCGTGAATCTGGGCCTTATCCATCTTAGCATCTCGCAAAGCCTTCTCAACAGG 147 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3779341938646804