Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20haematobium_20[refseq_20GCF_5F000699445.1_202014-06- 09] 29,834 sequences; 375,894,156 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq4589 237 2e-57 seq2017 152 7e-32 seq1010 82.4 1e-10 >seq4589 Length=1669 Score = 237 bits (262), Expect = 2e-57 Identities = 482/707 (68%), Gaps = 14/707 (2%) Strand=Plus/Plus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 || ||||||||||| |||||||||||||| || || || | || || || || ||||| Sbjct 134 TCAAAATCTTCACCTCCCAAGTGTGTATCACCAGCAGTAGACTTCACCTCGAATATACCA 193 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 | ||||| | || | || |||||||| ||||||||||||| ||||| || | || Sbjct 194 TCCTCAATTGTCAAGATGGACACATCAAATGTACCACCACCCAAATCAAATATCAACACA 253 Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636 || || | | ||||| || | ||| || || || ||||| || || || ||| Sbjct 254 TTACGCTCACCACCAACCTTCTTGTCTAAACCATAGGCAATTGCCGCAGCTGTCGGCTCA 313 Query 7637 TTAATAATACG-AAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCG 7695 ||||| || | || ||| || || ||||| |||| | ||||||||||| ||||| || Sbjct 314 TTAATGATTCTCAACACA-TTAAGACCAGCTATAGCACCTGCATCTTTCGTTGCTTGACG 372 Query 7696 TTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAG 7755 ||| || || ||||| || || || |||| |||||||| | ||| || | || | Sbjct 373 TTGACTGTCATTGAAGTAAGCAGGAACTGTTATAACCGCGTCACTTACTGTCCTGCCCAA 432 Query 7756 ATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGC 7815 ||| ||| || | || |||||||| || | |||||||| |||||||| || || | Sbjct 433 ATAACTTTCAGCAACCTCCTTCATTTTCGTCAACACCATCGACGAAATCTCCTCCGCGGA 492 Query 7816 AAACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGGG 7875 ||| || | ||||| ||| | ||||| |||| | | ||| || | | | Sbjct 493 GAACAACTTTTTCTCACCCTTATACTCAACACGAATCTTCAGCTTA---CCACCGACTTG 549 Query 7876 GATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGG-TC--CGAAAACTT 7932 | |||| | | | ||||| |||||||| || || ||| ||| || ||||| Sbjct 550 AACCACCTCAAATGGCCAATGCTTCATATC-ACTCTGAACTGATGGATCATCGAAA--CG 606 Query 7933 TCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTT 7992 | ||||| || ||||| |||||||| ||||| ||| | || || || || |||||| Sbjct 607 ACGACCGATTAGCCGCTTCGCATCAAACACTGTATTTGTTGGATTAATAGCCACTTGGTT 666 Query 7993 CTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGT 8052 |||||| | || || || | ||| ||| | || || ||||| || || || || Sbjct 667 CTTCGCTCCATCACCAATTAAACGCTCAGCA---TCTGTGAACGCCACATAACTCGGTGT 723 Query 8053 CGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGAC 8112 ||||| || || || || || ||||| || || || | | | || | || || || Sbjct 724 CGTTCTGTTACCCTGATCATTGGCAATTATCTCCACTTTGCCATGCTGGAAAACACCAAC 783 Query 8113 GCACGAATACGTTGTTCCTAAATCAATACCGATTGCTTGAGTCATTT 8159 |||||||| ||||| || | ||| || || || || | || ||||| Sbjct 784 ACACGAATATGTTGTACCAAGATCGATCCCAATGGCGTTAGGCATTT 830 >seq2017 Length=18414 Score = 152 bits (168), Expect = 7e-32 Identities = 252/363 (69%), Gaps = 3/363 (1%) Strand=Plus/Minus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 ||||| || || ||||| | ||||| || || || || ||||| || | ||| Sbjct 4794 TCGAAGTCCTCTCCACCAAGATGTGTGTCACCATTTGTAGCAACTACTTCGAACACACCG 4735 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 ||||| | | | ||||| || || |||||||| || || ||||| || || | Sbjct 4734 TTCTCAATTGTAAGTAGTGAAACGTCGAAAGTACCACCTCCAAGATCAAATATCAGAATA 4675 Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636 ||| | || | ||||| |||||| |||||||| || || || || || ||||||||| Sbjct 4674 TTCTTCTCACCATCTTT---CTTATCTAGACCGTAAGCAATCGCAGCAGCAGTTGGTTCA 4618 Query 7637 TTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGT 7696 ||||| || || || |||| |||||||| || | |||||||| || || || || Sbjct 4617 TTAATGATCCGGAGTATATTCAAACCAGCAATTGTGCCAGCATCTTTGGTTGCCTGGCGC 4558 Query 7697 TGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGA 7756 || | ||||||||| ||||| ||||| || || || || | || || || || || ||| Sbjct 4557 TGTGCATCGTTAAAATAGGCTGGGACAGTGACTACTGCATGGGTAACCTTTTTGCCAAGA 4498 Query 7757 TACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCA 7816 || ||||| || | |||||||| || | ||||| | || ||||| || | ||| Sbjct 4497 TAGGATTCAGCAAACTCTTTCATCTTCCCTAACACCATAGCAGAGATCTCCTCTGGGGCA 4438 Query 7817 AAC 7819 ||| Sbjct 4437 AAC 4435 >seq1010 Length=92424 Score = 82.4 bits (90), Expect = 1e-10 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 115062 ATAATCACCGACGCGCTTTTCAAAAAAGTTTGTTTTGCCGTCGAGTGATATATTCTCCAT 115121 ||| ||||| || ||||| |||||||||||||| || || |||| |||||||| ||||| Sbjct 81950 ATATTCACCAACTCGCTTCTCAAAAAAGTTTGTCTTTCCTTCGATCGATATATTTTCCAT 82009 Query 115122 AAAATCAAAGGGATT 115136 ||| ||||| ||||| Sbjct 82010 AAAGTCAAAAGGATT 82024 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 634895943100560