Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20haematobium_20[refseq_20GCF_5F000699445.1_202014-06- 09] 29,834 sequences; 375,894,156 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq26094 147 5e-30 seq1104 143 6e-29 seq2294 138 3e-27 seq52 127 5e-24 seq523 125 2e-23 >seq26094 Length=224 Score = 147 bits (162), Expect = 5e-30 Identities = 163/216 (75%), Gaps = 6/216 (3%) Strand=Plus/Minus Query 194928 CAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATC 194987 ||| || | |||||||||||||||||| || ||||||||||| | | || | ||||| Sbjct 213 CAACACCAAGTGAAGAGTGGACTCTTTCTGGATATTGTAATCAGACAATGTACGACCATC 154 Query 194988 TTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTC 195047 ||| |||||||| || || ||||| || || || ||||| || ||||| |||||||| || Sbjct 153 TTCCAGCTGCTTCCCAGCAAAGATCAGACGCTGCTGGTCGGGTGGAATTCCTTCTTTATC 94 Query 195048 TTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAAC 195104 |||||| || ||| || |||||||||||||| ||| ||| ||||| | || | Sbjct 93 TTGAATCTTAGCCTTCACATTCTCAATGGTGTC---ACTCGGTTCGACTTCCAAAGTGAT 37 Query 195105 CGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||| || || ||||| || || || || | ||||| Sbjct 36 CGTTTTACCAGTCAATGTCTTCACAAAAATCTGCAT 1 >seq1104 Length=79538 Score = 143 bits (158), Expect = 6e-29 Identities = 162/216 (75%), Gaps = 6/216 (3%) Strand=Plus/Minus Query 194928 CAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATC 194987 ||| || | |||||||||||||||||| || ||||||||||| | | || | ||||| Sbjct 62163 CAACACCAAGTGAAGAGTGGACTCTTTCTGGATATTGTAATCAGACAATGTACGACCATC 62104 Query 194988 TTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTC 195047 ||| |||||||| || || ||||| || || ||||| || || || || |||||||| || Sbjct 62103 TTCCAGCTGCTTCCCAGCAAAGATCAGACGCTGTTGATCGGGTGGGATTCCTTCTTTATC 62044 Query 195048 TTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAAC 195104 |||||| || ||| || |||||||||||||| ||| ||| ||||| | || | Sbjct 62043 TTGAATCTTAGCCTTCACATTCTCAATGGTGTC---ACTCGGTTCGACTTCCAAAGTGAT 61987 Query 195105 CGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||| || || ||||| || || || || | ||||| Sbjct 61986 CGTTTTACCAGTCAATGTCTTCACAAAAATCTGCAT 61951 Score = 143 bits (158), Expect = 6e-29 Identities = 162/216 (75%), Gaps = 6/216 (3%) Strand=Plus/Minus Query 194928 CAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATC 194987 ||| || | |||||||||||||||||| || ||||||||||| | | || | ||||| Sbjct 62391 CAACACCAAGTGAAGAGTGGACTCTTTCTGGATATTGTAATCAGACAATGTACGACCATC 62332 Query 194988 TTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTC 195047 ||| |||||||| || || ||||| || || ||||| || || || || |||||||| || Sbjct 62331 TTCCAGCTGCTTCCCAGCAAAGATCAGACGCTGTTGATCGGGTGGGATTCCTTCTTTATC 62272 Query 195048 TTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAAC 195104 |||||| || ||| || |||||||||||||| ||| ||| ||||| | || | Sbjct 62271 TTGAATCTTAGCCTTCACATTCTCAATGGTGTC---ACTCGGTTCGACTTCCAAAGTGAT 62215 Query 195105 CGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||| || || ||||| || || || || | ||||| Sbjct 62214 CGTTTTACCAGTCAATGTCTTCACAAAAATCTGCAT 62179 Score = 138 bits (152), Expect = 3e-27 Identities = 161/216 (75%), Gaps = 6/216 (3%) Strand=Plus/Minus Query 194928 CAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATC 194987 ||| || | |||||||||||||||||| || ||||||||||| | | || | ||||| Sbjct 61707 CAACACCAAGTGAAGAGTGGACTCTTTCTGGATATTGTAATCAGACAATGTACGACCATC 61648 Query 194988 TTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTC 195047 ||| |||||||| || || ||||| || || ||||| || || || || |||||||| || Sbjct 61647 TTCCAGCTGCTTCCCAGCAAAGATCAGACGCTGTTGATCGGGTGGGATTCCTTCTTTATC 61588 Query 195048 TTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAAC 195104 ||| || || ||| || |||||||||||||| ||| ||| ||||| | || | Sbjct 61587 TTGGATCTTAGCCTTCACATTCTCAATGGTGTC---ACTCGGTTCGACTTCCAAAGTGAT 61531 Query 195105 CGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||| || || ||||| || || || || | ||||| Sbjct 61530 CGTTTTACCAGTCAATGTCTTCACAAAAATCTGCAT 61495 Score = 138 bits (152), Expect = 3e-27 Identities = 161/216 (75%), Gaps = 6/216 (3%) Strand=Plus/Minus Query 194928 CAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATC 194987 ||| || | |||||||||||||||||| || ||||||||||| | | || | ||||| Sbjct 61935 CAACACCAAGTGAAGAGTGGACTCTTTCTGGATATTGTAATCAGACAATGTACGACCATC 61876 Query 194988 TTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTC 195047 ||| |||||||| || || ||||| || || ||||| || || || || |||||||| || Sbjct 61875 TTCCAGCTGCTTCCCAGCAAAGATCAGACGCTGTTGATCGGGTGGGATTCCTTCTTTATC 61816 Query 195048 TTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAAC 195104 ||| || || ||| || |||||||||||||| ||| ||| ||||| | || | Sbjct 61815 TTGGATCTTAGCCTTCACATTCTCAATGGTGTC---ACTCGGTTCGACTTCCAAAGTGAT 61759 Query 195105 CGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||| || || ||||| || || || || | ||||| Sbjct 61758 CGTTTTACCAGTCAATGTCTTCACAAAAATCTGCAT 61723 >seq2294 Length=11734 Score = 138 bits (152), Expect = 3e-27 Identities = 159/214 (74%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 194928 CAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATC 194987 || |||||| || | || |||||||| || || ||||| || | ||||| | ||||| Sbjct 1554 CAGAACAAGATGTAAGGTTGACTCTTTCTGGATGTTGTAGTCAGACAGAGTACGTCCATC 1495 Query 194988 TTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTC 195047 ||| | ||||||||| ||||| || | ||||||||||| |||||||| ||||||||||| Sbjct 1494 TTCCAACTGCTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTGTC 1435 Query 195048 TTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGT 195107 ||||||||| || || |||||||| || || | || || || | | || ||| Sbjct 1434 TTGAATTTTAGCTTTCACATTCTCAATAGTATCACTAGGCTCAACCTCTAACGGAATCGT 1375 Query 195108 CTTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 ||| || | ||| || || || || | ||||||| Sbjct 1374 CTTACCAGGCAACGTCTTCACAAAGATTTGCATT 1341 Score = 134 bits (148), Expect = 3e-26 Identities = 119/149 (80%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||| || ||||| |||||||| || || ||||| || | ||||| | |||||||| Sbjct 1322 ACAAGATGCAGAGTCGACTCTTTCTGGATGTTGTAGTCAGACAGAGTACGTCCATCTTCC 1263 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 | ||||||||| ||||| || | ||||||||||| |||||||| ||||||||||||||| Sbjct 1262 AACTGCTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTGTCTTGA 1203 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTC 195080 ||||| || || |||||||| || || Sbjct 1202 ATTTTAGCTTTCACATTCTCAATAGTATC 1174 >seq52 Length=730220 Score = 127 bits (140), Expect = 5e-24 Identities = 120/153 (78%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 194928 CAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATC 194987 || |||||| || | || |||||||| || || ||||| || | ||||| | ||||| Sbjct 729720 CAGAACAAGATGTAAGGTTGACTCTTTCTGGATGTTGTAGTCAGACAGAGTACGTCCATC 729661 Query 194988 TTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTC 195047 ||| | ||||||||| ||||| || | ||||||||||| |||||||| ||||||||||| Sbjct 729660 TTCCAACTGCTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTGTC 729601 Query 195048 TTGAATTTTTTGCTTGACGTTCTCAATGGTGTC 195080 ||||||||| || || |||||||| || || Sbjct 729600 TTGAATTTTAGCTTTCACATTCTCAATAGTATC 729568 >seq523 Length=224339 Score = 125 bits (138), Expect = 2e-23 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||| ||||| || || || || || ||||| || |||| |||||||| |||||||| Sbjct 140046 ACAAGATGAAGTGTTGATTCCTTCTGTATATTATAGTCGGAAAGAGTTCGTCCATCTTCC 140105 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 || || || || || || || || |||||||||||||| || ||||||||||| |||||| Sbjct 140106 AGTTGTTTGCCAGCAAAAATTAGACGTTGTTGGTCTGGTGGGATGCCTTCTTTATCTTGA 140165 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 ||||| ||| || || || || || | | || ||||| ||||| | || ||| Sbjct 140166 ATTTTCGCCTTAACTGCTTCTATTGTATCAGCAGGCTCAACTTCTAGGGTTATAGTTTTT 140225 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | || || || || | ||||| Sbjct 140226 CCCGTAAGTGTCTTCACAAAAATCTGCAT 140254 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109057502738678