Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20haematobium_20[refseq_20GCF_5F000699445.1_202014-06- 09] 29,834 sequences; 375,894,156 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq1010 271 9e-68 seq3397 114 1e-20 seq7458 109 6e-19 >seq1010 Length=92424 Score = 271 bits (300), Expect = 9e-68 Identities = 517/758 (68%), Gaps = 4/758 (1%) Strand=Plus/Plus Query 18780 TTCTAATAGTAGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCAT 18839 ||| | |||||| || || || | ||||| ||| || ||||| | |||||||| Sbjct 82089 TTCAACTAGTAGCCTGTCTGCGATAAATTCAATGTACTGACACATCAGTTTGCAATTCAT 82148 Query 18840 TCCTATTAATTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTC 18899 ||| ||||| | || ||||| || |||| | ||| ||||||||||| || ||||| Sbjct 82149 TCCAATTAAGCTGACTGGTAGAGCTTCTGATAAAAACTCTTGTTCTATTAGAACCGCCTC 82208 Query 18900 TGATATAATAGATACAACTCTATCTTCATTAGGAGGGTATAGAAGATGTTTAAACATCAA 18959 | ||| || || | || | ||||| ||| | | || ||||||||| | | Sbjct 82209 TCTTATTATTGACTCGACACGTTCTTCCGAAGGCTTTTTGATAATATGTTTAAATAATAG 82268 Query 18960 ACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAA 19019 ||| || ||||||||||||||||| ||||||||||| || |||||||| ||| | | Sbjct 82269 ACAAGCGAAATCACAATGTAGTCCTTCGTCTCTACTGATTAATTCATTGCTAAAAGACAG 82328 Query 19020 ACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAA 19079 |||||||| || |||| ||| || | ||||||||||| || || |||||||| || Sbjct 82329 TCCAGGCATAAGACCTCGTTTCTTAAGCCAGAATATAGCTGCGAAGCTACCAGAAAAAAA 82388 Query 19080 TATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATG 19139 | |||||| |||||||||||||||| || | |||| || || ||| | || Sbjct 82389 AACACCTTCCACTGCTGCAAAAGCAATTAAACGTTCTGCAAAAGTAGATTTGGAATCTCC 82448 Query 19140 AATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCA--TTGTCTCTATAGAA 19197 |||||| | | |||||| | |||||| ||| ||||| | | ||| || ||| | Sbjct 82449 AATCCAATCTAATGCCCACTGAGCCTTTTTTGCAACACAAGTTAAGTTG-CT-TATGGCG 82506 Query 19198 TTAAATAGATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTAC 19257 || || ||| | | || | | ||||| | |||| ||| || |||||| |||| Sbjct 82507 TTGAAGAGAAAGTCCCTTTCTTTGGAGTCTTTGATGTATGTATCAATTAATAAAGAGTAC 82566 Query 19258 ATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTT 19317 ||||| || |||||||| || ||||| ||||| | ||| ||||| || | | |||| Sbjct 82567 ATTTCAGAGTGAATATTCTCGATAGCTATCTGCATTCCATAAAAGCAACGAACCTCTGGG 82626 Query 19318 ATCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCT 19377 ||||| ||||| | || | ||| | | || || || ||||| ||||| || Sbjct 82627 ATCTGGACTTCCTGGCTGAAGCGTTCTAGGAGGTTCTCGAGTACAATTCCGTCACTCGCC 82686 Query 19378 GCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTATTCCAA 19437 ||||| || ||||| || | || ||||| ||| | | | | | |||| Sbjct 82687 GCAAAGAAAGCTAACACGTAGGATATGAAATGACGTTCCCCAACCTTGAGCGACTCCCAA 82746 Query 19438 TCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTT 19497 | | | |||||| || ||||| || ||||| || |||||||||||||| | || || Sbjct 82747 TGTATGAGATCTTTGGACAAATCCACCTCTTCCACAGTCCAAAAAGAAGCTACAGCCTTC 82806 Query 19498 TTATACATGTTCCATATATCACGATATTGTATAGGAAA 19535 ||||| | | ||| | ||| |||||| ||| || || Sbjct 82807 TTATAAAAATGCCAGACATCGTGATATTCTATGGGGAA 82844 >seq3397 Length=2750 Score = 114 bits (126), Expect = 1e-20 Identities = 261/387 (67%), Gaps = 7/387 (2%) Strand=Plus/Minus Query 47049 CTCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGTTCTGAAATATGAATA 47108 ||||| |||||||||||||||| |||| ||| ||| | |||| | | ||| | Sbjct 2709 CTCCAAGCATAGAAATGCATACTTGTTATTTTTCCATAGTTCGGTTGGGCGAGATGTAAG 2650 Query 47109 TTAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACC 47168 |||||||| || || || |||||||||| | | | | || |||||||| | ||| | Sbjct 2649 TTAAGAGACTGGCTTTGGTCAATAAATGGGGCACGACCTGCAGCCATATCGATAATCTTC 2590 Query 47169 CTTTGTGGTATCTCCCATACTGTTTTATAAATTTGTTTAATGTCTTCTGGGA---GATTA 47225 |||| | |||||||||||||| || || | |||| | || | || | || Sbjct 2589 TTTTGCGAAATCTCCCATACTGTCTTGTACAAAGGTTTTAACTCCTTAGGAATTCCATCG 2530 Query 47226 GTATTTTGAATAGATCCTCCgttttctataattttgttttttaa-ttcatttgaccaaag 47284 ||| ||||||||| || | | || | | | | |||||| ||| | ||||| | Sbjct 2529 ATATGTTGAATAGAACC-CTGATTCAAAACAATCGCTGTTTTAAGTTCGTCCGACCACAA 2471 Query 47285 ttttcgttcagttaatgtttttaa-AAGATGAGGATTAACAATTTGAAATTCTCCAGATA 47343 | || || ||| | | || ||||| ||||| ||||| || ||||| ||| || Sbjct 2470 CCCTAATTTAG-TAAGATCATCAAGAAGATATGGATTCACAATCTGGAATTCACCACTTA 2412 Query 47344 GTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGATTCATTATTTCCAAAAA 47403 || | || | ||| || ||||| | ||||| |||| ||||| || |||| || Sbjct 2411 ACACGCGGCGAGAAAATACGTTGCTTGTGAAGGGTTCAGTAGACTCATTGTTCCCAAGAA 2352 Query 47404 TTTGAGCAGTTGATGCTGTAGGCATGG 47430 | |||| ||||||||||| ||||||| Sbjct 2351 TCTGAGATGTTGATGCTGTTGGCATGG 2325 >seq7458 Length=1001 Score = 109 bits (120), Expect = 6e-19 Identities = 135/185 (73%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 48480 ATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATT 48539 || || ||||| || || |||||||||| | ||||| ||| | ||||| ||||| Sbjct 58 ATTCCAATACCCCCGGCATTTTTAGATATAATTGCACATTCTTTCAACGTATCGTAAATG 117 Query 48540 CCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGGATGACAA 48599 |||||||||||||| ||| ||||| | | ||||||||||| || | || || | | Sbjct 118 CCTTCTATACTATCGTCTTTCATAGTGATAAGAAAACAACTTGAAAGCTGTGGTTTGGGA 177 Query 48600 GTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTA 48659 ||||| | ||||| | ||| || || ||||| |||||||||| || || | || ||| Sbjct 178 GTTCCAGCGTTAAAAAGTGTCGGTGAAGCATGTGTAAACCATTTTTCAGACATCAGGTTA 237 Query 48660 TATGT 48664 || || Sbjct 238 TACGT 242 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561899175575760