Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20haematobium_20[refseq_20GCF_5F000699445.1_202014-06- 09] 29,834 sequences; 375,894,156 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq4589 206 2e-47 seq2017 161 8e-34 seq523 141 7e-28 seq2294 91.5 1e-12 seq26094 89.7 4e-12 seq52 87.8 1e-11 seq1104 86.0 5e-11 >seq4589 Length=1669 Score = 206 bits (228), Expect = 2e-47 Identities = 410/599 (68%), Gaps = 11/599 (2%) Strand=Plus/Minus Query 549992 GCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAA 550051 || || || || ||| | || || |||||| ||||||||||||| || |||| ||| Sbjct 819 GCCATTGGGATCGATCTTGGTACAACATATTCGTGTGTTGGTGTTTTCCAGCATGGCAAA 760 Query 550052 GTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACG 550111 || || || |||||||||||||| ||||||||||| || || |||||| | ||||| Sbjct 759 GTGGAGATAATTGCCAATGATCAGGGTAACAGAACGACACCGAGTTATGTGGCGTTCACA 700 Query 550112 GAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAAT 550171 || |||| | |||| ||||||||| ||| || | |||| || |||||| || ||| Sbjct 699 GATGCTGAGCGTTTAATTGGTGATGGAGCGAAGAACCAAGTGGCTATTAATCCAACAAAT 640 Query 550172 ACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCA 550231 || | |||||||| || || |||| || | |||| ||||| | | |||||| Sbjct 639 ACAGTGTTTGATGCGAAGCGGCTAATCGGTCGTCGTTTCGATGATCCATCAGTTCAGAGT 580 Query 550232 GATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAGCT 550291 ||||||||||||||||| || | | ||| | || ||| || | | ||| | | Sbjct 579 GATATGAAGCATTGGCCATTTGAGGTGGTTCAAGTCGGTGGTAAGCTGAAGATTCGTGTT 520 Query 550292 ACTCATGAAGGATCTGTTAAACAATT-TTCAC--CAGAACAAATTTCATCTATGGTTTTA 550348 || |||| || ||| | || ||| | | || | ||||| || ||||| || Sbjct 519 GAGTAT-AAGG--GTGAGAAAAAGTTGTTCTCCGCGGAGGAGATTTCGTCGATGGTGTTG 463 Query 550349 ATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGA-AGTTACGGATGCAGTAAT 550407 | ||||||||| | | | | || |||| || || ||| | || || || || Sbjct 462 ACGAAAATGAAGGAGGTTG-CTGAAAGTTATTTGGGCAGGACAGTAAGTGACGCGGTTAT 404 Query 550408 AACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTAT 550467 ||| || || || || || |||||| ||||||||||| || |||||||| || ||| Sbjct 403 AACAGTTCCTGCTTACTTCAATGACAGTCAACGTCAAGCAACGAAAGATGCAGGTGCTAT 344 Query 550468 TGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGG 550527 ||||| |||||||| | | || || ||||| || || ||||| ||| |||| ||||| Sbjct 343 AGCTGGTCTTAATGTGTTGAGAATCATTAATGAGCCGACAGCTGCGGCAATTGCCTATGG 284 Query 550528 ACTTGATAAACATAATGATCAAGAACTTAATGTACTCATCTTTGATT---GTGGAGGTA 550583 | || || | || | || | |||||| | || ||||||| |||| |||| Sbjct 283 TTTAGACAAGAAGGTTGGTGGTGAGCGTAATGTGTTGATATTTGATTTGGGTGGTGGTA 225 >seq2017 Length=18414 Score = 161 bits (178), Expect = 8e-34 Identities = 377/563 (67%), Gaps = 12/563 (2%) Strand=Plus/Plus Query 550026 GTGTTGGTGTTTGGCAAAATGGTAAAGTTGAAATTATTGCCAATGATCAAGGTAACAGAA 550085 |||||||||| | ||| || |||||| |||||||| |||||||| |||||||| | Sbjct 4143 GTGTTGGTGTATTTCAAGGAGGCCGAGTTGAGATTATTGCGAATGATCAGGGTAACAGGA 4202 Query 550086 CTACTCCATCTTATGTTTCTTTCAC---GGAAACTGAACATTTAGTTGGTGATGCAGCAA 550142 |||||| || || || | ||||| |||| || | ||| |||| ||||| || | Sbjct 4203 TTACTCCCTCATACGTAGCATTCACTCCGGAAGGCGAGCGATTAATTGGGGATGCTGCTA 4262 Query 550143 AATATCAAGCCACTGGTAATCCTACCAATACTATTTTTGATGCTAAACGTTTAATTGGAA 550202 || | || || ||||| || || ||||| || | || | | ||||||| Sbjct 4263 AAAACCAGCTGACATCAAATCCAGAAAACACAATTTTCGACGTCAAGAGACTTATTGGAA 4322 Query 550203 GAAGTTTTAATGATTCGACTGTTCAGGCAGATATGAAGCATTGGCCTTTCCAAATTGTTA 550262 | | || |||| || ||||| || || || | |||| ||||| |||||| Sbjct 4323 GGAAGTTCGATGAATCAACTGTACAAAATGACATAACTCATTACCCTTTTTCCGTTGTTA 4382 Query 550263 ATGTTTCTGGAAAACCTTATATTGAAGCTACTCATGAAGGATCTGT--TAAACAATTTT- 550319 || ||||| ||||| |||| | || | ||||| | | || | ||| Sbjct 4383 ATAAAAAGAACAAACCATATATCGAAGTT---CACGTTGGATCAGAAGTCAAGACGTTTG 4439 Query 550320 CACCAGAACAAATTTCATCTATGGTTTTAATGAAAATGAAACAAACAGCCAGTGCTTTTG 550379 | ||||| | || || ||||||| ||| ||| |||||| | || | | | Sbjct 4440 CCCCAGAGGAGATCTCTGCTATGGTGTTAGGGAAGATGAAAGAGTTTGCTGAATCCTATC 4499 Query 550380 TTGGTCAAGAAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAAC 550439 |||| || | ||||| |||||||| | ||||| ||||| |||||||| || |||| | Sbjct 4500 TTGGCAAAAAGGTTACCCATGCAGTAGTCACTGTCCCAGCCTATTTTAACGATGCACAGC 4559 Query 550440 GTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATG 550499 | || || || ||||||||||| |||||||| | ||| | || || || || |||| Sbjct 4560 GCCAGGCAACCAAAGATGCTGGCACAATTGCTGGTTTGAATATACTCCGGATCATTAATG 4619 Query 550500 AACCTACTGCTGCTGCACTTGCATATGGACTTGATAAACATAATGATCAAGAACTTAATG 550559 |||| ||||||||||| |||| || || || ||||| | ||| | |||| ||| Sbjct 4620 AACCAACTGCTGCTGCGATTGCTTACGGTCTAGATAAGAAAGATGGT-GAGAA--GAATA 4676 Query 550560 TACTCATCTTTGATTGTGGAGGT 550582 | || || |||||| ||||||| Sbjct 4677 TTCTGATATTTGATCTTGGAGGT 4699 >seq523 Length=224339 Score = 141 bits (156), Expect = 7e-28 Identities = 162/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTT 563316 |||||||| ||||||||||| || ||| || ||||| || || | ||||||| | Sbjct 140037 AGACGGAGGACAAGATGAAGTGTTGATTCCTTCTGTATATTATAGTCGGAAAGAGTTCGT 140096 Query 563317 GAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCT 563376 |||||| |||||||| || |||||||| || | ||| || || || || || |||||| Sbjct 140097 CCATCTTCCAGTTGTTTGCCAGCAAAAATTAGACGTTGTTGGTCTGGTGGGATGCCTTCT 140156 Query 563377 TTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGAGAGTA 563436 |||||||||||||| || ||||| || |||||||||| | | ||| || || Sbjct 140157 TTATCTTGAATTTTCGCCTTAACTGCTTCTATTGTATCAGCAGGCTCAACTTCTAGGGTT 140216 Query 563437 ACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 | |||||| || ||||| || || || ||||| ||||| Sbjct 140217 ATAGTTTTTCCCGTAAGTGTCTTCACAAAAATCTGCAT 140254 >seq2294 Length=11734 Score = 91.5 bits (100), Expect = 1e-12 Identities = 118/161 (73%), Gaps = 4/161 (2%) Strand=Plus/Minus Query 563257 AGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTC 563314 ||||| || |||||||| || || ||| | | ||| || ||||| |||| ||||| | Sbjct 1331 AGACGAAGGACAAGATGCAGAGTCGACTCTTTCTGG--ATGTTGTAGTCAGACAGAGTAC 1274 Query 563315 TTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTT 563374 | |||||| | || || || || || || | | ||| || ||||||||||| |||| Sbjct 1273 GTCCATCTTCCAACTGCTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGAATACCTT 1214 Query 563375 CTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCA 563415 |||| ||||||||||| ||| || |||||| |||||| Sbjct 1213 CTTTGTCTTGAATTTTAGCTTTCACATTCTCAATAGTATCA 1173 Score = 87.8 bits (96), Expect = 1e-11 Identities = 117/161 (73%), Gaps = 4/161 (2%) Strand=Plus/Minus Query 563257 AGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTC 563314 || || || |||||||| | ||| ||| | | ||| || ||||| |||| ||||| | Sbjct 1559 AGGCGCAGAACAAGATGTAAGGTTGACTCTTTCTGG--ATGTTGTAGTCAGACAGAGTAC 1502 Query 563315 TTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTT 563374 | |||||| | || || || || || || | | ||| || ||||||||||| |||| Sbjct 1501 GTCCATCTTCCAACTGCTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGAATACCTT 1442 Query 563375 CTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCA 563415 |||| ||||||||||| ||| || |||||| |||||| Sbjct 1441 CTTTGTCTTGAATTTTAGCTTTCACATTCTCAATAGTATCA 1401 >seq26094 Length=224 Score = 89.7 bits (98), Expect = 4e-12 Identities = 151/212 (71%), Gaps = 9/212 (4%) Strand=Plus/Minus Query 563267 CAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTTC 563324 |||| ||||| || ||| | | ||| ||||||||||||| | || | |||||| Sbjct 207 CAAG-TGAAGAGTGGACTCTTTCTGG--ATATTGTAATCAGACAATGTACGACCATCTTC 151 Query 563325 AAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTG 563384 || || || || ||||| || || | ||||| || || |||||||||||||||||||| Sbjct 150 CAGCTGCTTCCCAGCAAAGATCAGACGCTGCTGGTCGGGTGGAATTCCTTCTTTATCTTG 91 Query 563385 AATTTTTTGTTTTACTGCCTCAATTGTATCAGT--GTGAGTACATTCGAGAGTAACAGTT 563442 ||| || || || |||||| || ||| | || | || ||| | ||| | ||| Sbjct 90 AATCTTAGCCTTCACATTCTCAATGGTGTCACTCGGTTCG-AC-TTCCAAAGTGATCGTT 33 Query 563443 TTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 |||||||| | || || || ||||| ||||| Sbjct 32 TTACCAGTCAATGTCTTCACAAAAATCTGCAT 1 >seq52 Length=730220 Score = 87.8 bits (96), Expect = 1e-11 Identities = 117/161 (73%), Gaps = 4/161 (2%) Strand=Plus/Minus Query 563257 AGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTC 563314 || || || |||||||| | ||| ||| | | ||| || ||||| |||| ||||| | Sbjct 729725 AGGCGCAGAACAAGATGTAAGGTTGACTCTTTCTGG--ATGTTGTAGTCAGACAGAGTAC 729668 Query 563315 TTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTT 563374 | |||||| | || || || || || || | | ||| || ||||||||||| |||| Sbjct 729667 GTCCATCTTCCAACTGCTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGAATACCTT 729608 Query 563375 CTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCA 563415 |||| ||||||||||| ||| || |||||| |||||| Sbjct 729607 CTTTGTCTTGAATTTTAGCTTTCACATTCTCAATAGTATCA 729567 >seq1104 Length=79538 Score = 86.0 bits (94), Expect = 5e-11 Identities = 151/213 (71%), Gaps = 9/213 (4%) Strand=Plus/Minus Query 563267 CAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTTC 563324 |||| ||||| || ||| | | ||| ||||||||||||| | || | |||||| Sbjct 62157 CAAG-TGAAGAGTGGACTCTTTCTGG--ATATTGTAATCAGACAATGTACGACCATCTTC 62101 Query 563325 AAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTG 563384 || || || || ||||| || || | || ||||| || || ||||||||||||||||| Sbjct 62100 CAGCTGCTTCCCAGCAAAGATCAGACGCTGTTGATCGGGTGGGATTCCTTCTTTATCTTG 62041 Query 563385 AATTTTTTGTTTTACTGCCTCAATTGTATCAGT--GTGAGTACATTCGAGAGTAACAGTT 563442 ||| || || || |||||| || ||| | || | || ||| | ||| | ||| Sbjct 62040 AATCTTAGCCTTCACATTCTCAATGGTGTCACTCGGTTCG-AC-TTCCAAAGTGATCGTT 61983 Query 563443 TTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475 |||||||| | || || || ||||| |||||| Sbjct 61982 TTACCAGTCAATGTCTTCACAAAAATCTGCATA 61950 Score = 86.0 bits (94), Expect = 5e-11 Identities = 151/213 (71%), Gaps = 9/213 (4%) Strand=Plus/Minus Query 563267 CAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTTC 563324 |||| ||||| || ||| | | ||| ||||||||||||| | || | |||||| Sbjct 62385 CAAG-TGAAGAGTGGACTCTTTCTGG--ATATTGTAATCAGACAATGTACGACCATCTTC 62329 Query 563325 AAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTG 563384 || || || || ||||| || || | || ||||| || || ||||||||||||||||| Sbjct 62328 CAGCTGCTTCCCAGCAAAGATCAGACGCTGTTGATCGGGTGGGATTCCTTCTTTATCTTG 62269 Query 563385 AATTTTTTGTTTTACTGCCTCAATTGTATCAGT--GTGAGTACATTCGAGAGTAACAGTT 563442 ||| || || || |||||| || ||| | || | || ||| | ||| | ||| Sbjct 62268 AATCTTAGCCTTCACATTCTCAATGGTGTCACTCGGTTCG-AC-TTCCAAAGTGATCGTT 62211 Query 563443 TTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475 |||||||| | || || || ||||| |||||| Sbjct 62210 TTACCAGTCAATGTCTTCACAAAAATCTGCATA 62178 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4027718243528660