Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schistosoma_20haematobium_20[refseq_20GCF_5F000699445.1_202014-06-
09] 29,834 sequences; 375,894,156 total letters
Query= NC_016072.1
Length=1259197
Score E
Sequences producing significant alignments: (Bits) Value
seq4589 206 2e-47
seq2017 161 8e-34
seq523 141 7e-28
seq2294 91.5 1e-12
seq26094 89.7 4e-12
seq52 87.8 1e-11
seq1104 86.0 5e-11
>seq4589
Length=1669
Score = 206 bits (228), Expect = 2e-47
Identities = 410/599 (68%), Gaps = 11/599 (2%)
Strand=Plus/Minus
Query 549992 GCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAA 550051
|| || || || ||| | || || |||||| ||||||||||||| || |||| |||
Sbjct 819 GCCATTGGGATCGATCTTGGTACAACATATTCGTGTGTTGGTGTTTTCCAGCATGGCAAA 760
Query 550052 GTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACG 550111
|| || || |||||||||||||| ||||||||||| || || |||||| | |||||
Sbjct 759 GTGGAGATAATTGCCAATGATCAGGGTAACAGAACGACACCGAGTTATGTGGCGTTCACA 700
Query 550112 GAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAAT 550171
|| |||| | |||| ||||||||| ||| || | |||| || |||||| || |||
Sbjct 699 GATGCTGAGCGTTTAATTGGTGATGGAGCGAAGAACCAAGTGGCTATTAATCCAACAAAT 640
Query 550172 ACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCA 550231
|| | |||||||| || || |||| || | |||| ||||| | | ||||||
Sbjct 639 ACAGTGTTTGATGCGAAGCGGCTAATCGGTCGTCGTTTCGATGATCCATCAGTTCAGAGT 580
Query 550232 GATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAGCT 550291
||||||||||||||||| || | | ||| | || ||| || | | ||| | |
Sbjct 579 GATATGAAGCATTGGCCATTTGAGGTGGTTCAAGTCGGTGGTAAGCTGAAGATTCGTGTT 520
Query 550292 ACTCATGAAGGATCTGTTAAACAATT-TTCAC--CAGAACAAATTTCATCTATGGTTTTA 550348
|| |||| || ||| | || ||| | | || | ||||| || ||||| ||
Sbjct 519 GAGTAT-AAGG--GTGAGAAAAAGTTGTTCTCCGCGGAGGAGATTTCGTCGATGGTGTTG 463
Query 550349 ATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGA-AGTTACGGATGCAGTAAT 550407
| ||||||||| | | | | || |||| || || ||| | || || || ||
Sbjct 462 ACGAAAATGAAGGAGGTTG-CTGAAAGTTATTTGGGCAGGACAGTAAGTGACGCGGTTAT 404
Query 550408 AACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTAT 550467
||| || || || || || |||||| ||||||||||| || |||||||| || |||
Sbjct 403 AACAGTTCCTGCTTACTTCAATGACAGTCAACGTCAAGCAACGAAAGATGCAGGTGCTAT 344
Query 550468 TGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGG 550527
||||| |||||||| | | || || ||||| || || ||||| ||| |||| |||||
Sbjct 343 AGCTGGTCTTAATGTGTTGAGAATCATTAATGAGCCGACAGCTGCGGCAATTGCCTATGG 284
Query 550528 ACTTGATAAACATAATGATCAAGAACTTAATGTACTCATCTTTGATT---GTGGAGGTA 550583
| || || | || | || | |||||| | || ||||||| |||| ||||
Sbjct 283 TTTAGACAAGAAGGTTGGTGGTGAGCGTAATGTGTTGATATTTGATTTGGGTGGTGGTA 225
>seq2017
Length=18414
Score = 161 bits (178), Expect = 8e-34
Identities = 377/563 (67%), Gaps = 12/563 (2%)
Strand=Plus/Plus
Query 550026 GTGTTGGTGTTTGGCAAAATGGTAAAGTTGAAATTATTGCCAATGATCAAGGTAACAGAA 550085
|||||||||| | ||| || |||||| |||||||| |||||||| |||||||| |
Sbjct 4143 GTGTTGGTGTATTTCAAGGAGGCCGAGTTGAGATTATTGCGAATGATCAGGGTAACAGGA 4202
Query 550086 CTACTCCATCTTATGTTTCTTTCAC---GGAAACTGAACATTTAGTTGGTGATGCAGCAA 550142
|||||| || || || | ||||| |||| || | ||| |||| ||||| || |
Sbjct 4203 TTACTCCCTCATACGTAGCATTCACTCCGGAAGGCGAGCGATTAATTGGGGATGCTGCTA 4262
Query 550143 AATATCAAGCCACTGGTAATCCTACCAATACTATTTTTGATGCTAAACGTTTAATTGGAA 550202
|| | || || ||||| || || ||||| || | || | | |||||||
Sbjct 4263 AAAACCAGCTGACATCAAATCCAGAAAACACAATTTTCGACGTCAAGAGACTTATTGGAA 4322
Query 550203 GAAGTTTTAATGATTCGACTGTTCAGGCAGATATGAAGCATTGGCCTTTCCAAATTGTTA 550262
| | || |||| || ||||| || || || | |||| ||||| ||||||
Sbjct 4323 GGAAGTTCGATGAATCAACTGTACAAAATGACATAACTCATTACCCTTTTTCCGTTGTTA 4382
Query 550263 ATGTTTCTGGAAAACCTTATATTGAAGCTACTCATGAAGGATCTGT--TAAACAATTTT- 550319
|| ||||| ||||| |||| | || | ||||| | | || | |||
Sbjct 4383 ATAAAAAGAACAAACCATATATCGAAGTT---CACGTTGGATCAGAAGTCAAGACGTTTG 4439
Query 550320 CACCAGAACAAATTTCATCTATGGTTTTAATGAAAATGAAACAAACAGCCAGTGCTTTTG 550379
| ||||| | || || ||||||| ||| ||| |||||| | || | | |
Sbjct 4440 CCCCAGAGGAGATCTCTGCTATGGTGTTAGGGAAGATGAAAGAGTTTGCTGAATCCTATC 4499
Query 550380 TTGGTCAAGAAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAAC 550439
|||| || | ||||| |||||||| | ||||| ||||| |||||||| || |||| |
Sbjct 4500 TTGGCAAAAAGGTTACCCATGCAGTAGTCACTGTCCCAGCCTATTTTAACGATGCACAGC 4559
Query 550440 GTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATG 550499
| || || || ||||||||||| |||||||| | ||| | || || || || ||||
Sbjct 4560 GCCAGGCAACCAAAGATGCTGGCACAATTGCTGGTTTGAATATACTCCGGATCATTAATG 4619
Query 550500 AACCTACTGCTGCTGCACTTGCATATGGACTTGATAAACATAATGATCAAGAACTTAATG 550559
|||| ||||||||||| |||| || || || ||||| | ||| | |||| |||
Sbjct 4620 AACCAACTGCTGCTGCGATTGCTTACGGTCTAGATAAGAAAGATGGT-GAGAA--GAATA 4676
Query 550560 TACTCATCTTTGATTGTGGAGGT 550582
| || || |||||| |||||||
Sbjct 4677 TTCTGATATTTGATCTTGGAGGT 4699
>seq523
Length=224339
Score = 141 bits (156), Expect = 7e-28
Identities = 162/218 (74%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTT 563316
|||||||| ||||||||||| || ||| || ||||| || || | ||||||| |
Sbjct 140037 AGACGGAGGACAAGATGAAGTGTTGATTCCTTCTGTATATTATAGTCGGAAAGAGTTCGT 140096
Query 563317 GAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCT 563376
|||||| |||||||| || |||||||| || | ||| || || || || || ||||||
Sbjct 140097 CCATCTTCCAGTTGTTTGCCAGCAAAAATTAGACGTTGTTGGTCTGGTGGGATGCCTTCT 140156
Query 563377 TTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGAGAGTA 563436
|||||||||||||| || ||||| || |||||||||| | | ||| || ||
Sbjct 140157 TTATCTTGAATTTTCGCCTTAACTGCTTCTATTGTATCAGCAGGCTCAACTTCTAGGGTT 140216
Query 563437 ACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474
| |||||| || ||||| || || || ||||| |||||
Sbjct 140217 ATAGTTTTTCCCGTAAGTGTCTTCACAAAAATCTGCAT 140254
>seq2294
Length=11734
Score = 91.5 bits (100), Expect = 1e-12
Identities = 118/161 (73%), Gaps = 4/161 (2%)
Strand=Plus/Minus
Query 563257 AGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTC 563314
||||| || |||||||| || || ||| | | ||| || ||||| |||| ||||| |
Sbjct 1331 AGACGAAGGACAAGATGCAGAGTCGACTCTTTCTGG--ATGTTGTAGTCAGACAGAGTAC 1274
Query 563315 TTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTT 563374
| |||||| | || || || || || || | | ||| || ||||||||||| ||||
Sbjct 1273 GTCCATCTTCCAACTGCTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGAATACCTT 1214
Query 563375 CTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCA 563415
|||| ||||||||||| ||| || |||||| ||||||
Sbjct 1213 CTTTGTCTTGAATTTTAGCTTTCACATTCTCAATAGTATCA 1173
Score = 87.8 bits (96), Expect = 1e-11
Identities = 117/161 (73%), Gaps = 4/161 (2%)
Strand=Plus/Minus
Query 563257 AGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTC 563314
|| || || |||||||| | ||| ||| | | ||| || ||||| |||| ||||| |
Sbjct 1559 AGGCGCAGAACAAGATGTAAGGTTGACTCTTTCTGG--ATGTTGTAGTCAGACAGAGTAC 1502
Query 563315 TTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTT 563374
| |||||| | || || || || || || | | ||| || ||||||||||| ||||
Sbjct 1501 GTCCATCTTCCAACTGCTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGAATACCTT 1442
Query 563375 CTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCA 563415
|||| ||||||||||| ||| || |||||| ||||||
Sbjct 1441 CTTTGTCTTGAATTTTAGCTTTCACATTCTCAATAGTATCA 1401
>seq26094
Length=224
Score = 89.7 bits (98), Expect = 4e-12
Identities = 151/212 (71%), Gaps = 9/212 (4%)
Strand=Plus/Minus
Query 563267 CAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTTC 563324
|||| ||||| || ||| | | ||| ||||||||||||| | || | ||||||
Sbjct 207 CAAG-TGAAGAGTGGACTCTTTCTGG--ATATTGTAATCAGACAATGTACGACCATCTTC 151
Query 563325 AAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTG 563384
|| || || || ||||| || || | ||||| || || ||||||||||||||||||||
Sbjct 150 CAGCTGCTTCCCAGCAAAGATCAGACGCTGCTGGTCGGGTGGAATTCCTTCTTTATCTTG 91
Query 563385 AATTTTTTGTTTTACTGCCTCAATTGTATCAGT--GTGAGTACATTCGAGAGTAACAGTT 563442
||| || || || |||||| || ||| | || | || ||| | ||| | |||
Sbjct 90 AATCTTAGCCTTCACATTCTCAATGGTGTCACTCGGTTCG-AC-TTCCAAAGTGATCGTT 33
Query 563443 TTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474
|||||||| | || || || ||||| |||||
Sbjct 32 TTACCAGTCAATGTCTTCACAAAAATCTGCAT 1
>seq52
Length=730220
Score = 87.8 bits (96), Expect = 1e-11
Identities = 117/161 (73%), Gaps = 4/161 (2%)
Strand=Plus/Minus
Query 563257 AGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTC 563314
|| || || |||||||| | ||| ||| | | ||| || ||||| |||| ||||| |
Sbjct 729725 AGGCGCAGAACAAGATGTAAGGTTGACTCTTTCTGG--ATGTTGTAGTCAGACAGAGTAC 729668
Query 563315 TTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTT 563374
| |||||| | || || || || || || | | ||| || ||||||||||| ||||
Sbjct 729667 GTCCATCTTCCAACTGCTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGAATACCTT 729608
Query 563375 CTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCA 563415
|||| ||||||||||| ||| || |||||| ||||||
Sbjct 729607 CTTTGTCTTGAATTTTAGCTTTCACATTCTCAATAGTATCA 729567
>seq1104
Length=79538
Score = 86.0 bits (94), Expect = 5e-11
Identities = 151/213 (71%), Gaps = 9/213 (4%)
Strand=Plus/Minus
Query 563267 CAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTTC 563324
|||| ||||| || ||| | | ||| ||||||||||||| | || | ||||||
Sbjct 62157 CAAG-TGAAGAGTGGACTCTTTCTGG--ATATTGTAATCAGACAATGTACGACCATCTTC 62101
Query 563325 AAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTG 563384
|| || || || ||||| || || | || ||||| || || |||||||||||||||||
Sbjct 62100 CAGCTGCTTCCCAGCAAAGATCAGACGCTGTTGATCGGGTGGGATTCCTTCTTTATCTTG 62041
Query 563385 AATTTTTTGTTTTACTGCCTCAATTGTATCAGT--GTGAGTACATTCGAGAGTAACAGTT 563442
||| || || || |||||| || ||| | || | || ||| | ||| | |||
Sbjct 62040 AATCTTAGCCTTCACATTCTCAATGGTGTCACTCGGTTCG-AC-TTCCAAAGTGATCGTT 61983
Query 563443 TTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475
|||||||| | || || || ||||| ||||||
Sbjct 61982 TTACCAGTCAATGTCTTCACAAAAATCTGCATA 61950
Score = 86.0 bits (94), Expect = 5e-11
Identities = 151/213 (71%), Gaps = 9/213 (4%)
Strand=Plus/Minus
Query 563267 CAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTTC 563324
|||| ||||| || ||| | | ||| ||||||||||||| | || | ||||||
Sbjct 62385 CAAG-TGAAGAGTGGACTCTTTCTGG--ATATTGTAATCAGACAATGTACGACCATCTTC 62329
Query 563325 AAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTG 563384
|| || || || ||||| || || | || ||||| || || |||||||||||||||||
Sbjct 62328 CAGCTGCTTCCCAGCAAAGATCAGACGCTGTTGATCGGGTGGGATTCCTTCTTTATCTTG 62269
Query 563385 AATTTTTTGTTTTACTGCCTCAATTGTATCAGT--GTGAGTACATTCGAGAGTAACAGTT 563442
||| || || || |||||| || ||| | || | || ||| | ||| | |||
Sbjct 62268 AATCTTAGCCTTCACATTCTCAATGGTGTCACTCGGTTCG-AC-TTCCAAAGTGATCGTT 62211
Query 563443 TTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475
|||||||| | || || || ||||| ||||||
Sbjct 62210 TTACCAGTCAATGTCTTCACAAAAATCTGCATA 62178
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 4027718243528660
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