Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20haematobium_20[refseq_20GCF_5F000699445.1_202014-06- 09] 29,834 sequences; 375,894,156 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq1010 262 5e-65 seq65 82.4 9e-11 >seq1010 Length=92424 Score = 262 bits (290), Expect = 5e-65 Identities = 573/853 (67%), Gaps = 50/853 (6%) Strand=Plus/Plus Query 36887 TTGATATTCTCCAACTCGTCTTTCGAAAAAATTTGTCTTTCCTTCTAGTGATATATTTTC 36946 ||||||||| |||||||| | || ||||| |||||||||||||| | ||||||||||| Sbjct 81947 TTGATATTCACCAACTCGCTTCTCAAAAAAGTTTGTCTTTCCTTCGATCGATATATTTTC 82006 Query 36947 CATAAAATCAAATGGATTAGATGTATTATATAT----------AGTACTACATGATAATT 36996 |||||| ||||| ||||| | || ||| || | | || | || |||| Sbjct 82007 CATAAAGTCAAAAGGATTGTCAGAATGATACATCTAAACGAAAACGATTAAAAGAAAATT 82066 Query 36997 -----------------CC---TTCA----GAAGCCTATCCGCAACAAATTCTATGTATT 37032 || |||| | ||||| || || | |||||| ||||| | Sbjct 82067 TACAAACCTTTTCATAACCAAGTTCAACTAGTAGCCTGTCTGCGATAAATTCAATGTACT 82126 Query 37033 TACACATTAGTTCATAGTTTATACCAATTAGTTTTACTGGAATTGCATCTTGAAGAAATA 37092 |||||| |||| | || || ||||||| | ||||| | || ||| | ||| Sbjct 82127 GACACATCAGTTTGCAATTCATTCCAATTAAGCTGACTGGTAGAGCTTCTGATAAAAACT 82186 Query 37093 GTTTTTCTATTATTACAGCATCTTTAACTATATTAACAATAACTTCTTCAGTTGGGGGAT 37152 || |||||||| || || ||| | | ||| | | | |||||| | || | Sbjct 82187 CTTGTTCTATTAGAACCGCCTCTCTTATTATTGACTCGACACGTTCTTCCGAAGGC---T 82243 Query 37153 ATTTTA-AATAT--TTAAACAATAAACATGCAAAATCACAATGTAAACCTTCATCTCTAC 37209 ||| | ||||| ||||| |||| ||| || ||||||||||||| ||||| ||||||| Sbjct 82244 TTTTGATAATATGTTTAAATAATAGACAAGCGAAATCACAATGTAGTCCTTCGTCTCTAC 82303 Query 37210 TTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATA 37269 | || |||||||| ||| | | ||| ||||| | ||||| ||| |||| ||| |||| Sbjct 82304 TGATTAATTCATTGCTAAAAGACAGTCCAGGCATAAGACCTCGTTTCTTAAGCCAGAATA 82363 Query 37270 TTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTG 37329 | ||||| || |||||||| |||| |||||| ||||||||||| || | | |||| Sbjct 82364 TAGCTGCGAAGCTACCAGAAAAAAAAACACCTTCCACTGCTGCAAAAGCAATTAAACGTT 82423 Query 37330 TACCGAAAGTTGAACTATAATCAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAA 37389 | ||||| || | |||| |||||| | | || ||| | |||||| | || Sbjct 82424 CTGCAAAAGTAGATTTGGAATCTCCAATCCAATCTAATGCCCACTGAGCCTTTTTTGCAA 82483 Query 37390 CACA--TTCAATTGTTTCAATTGCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTAT 37447 |||| || | ||| || || || || |||||||||| |||||| ||| | || Sbjct 82484 CACAAGTTAAGTTGCTT--ATGGCGTTGAAGAGAAAGTCCCTTTCTTTGGAGTCTTTGAT 82541 Query 37448 ATAAGTATCAATTAGTAAACTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAA 37507 || |||||||||| |||| |||||||||||||||||||| || ||||||||||| | Sbjct 82542 GTATGTATCAATTAATAAAGAGTACATTTCAGAGTGAATATTCTCGATAGCTATCTGCAT 82601 Query 37508 ACCATAAAAACACCTAGCTTCAGATAATTGAACATCGT-TAAAAAACCTCTTAGCTAAGT 37566 |||||||| || | | | || | | || || || | || | | ||| | || Sbjct 82602 TCCATAAAAGCAACGAACCTCTGGGATCTGGACTTCCTGGCTGAAGCGTTCTAG-GAGGT 82660 Query 37567 TTTCATTAACTATCCCATCACTAGCTGCAAAGAAAGCAAGAACATATTTTATAAAATGTC 37626 | || || || || ||||| || ||||||||||| | || || ||| ||||| | Sbjct 82661 TCTCGAGTACAATTCCGTCACTCGCCGCAAAGAAAGCTAACACGTAGGATATGAAATGAC 82720 Query 37627 TTTCATCA--TTTGATAATTTTTTCCAATCATTAATATCTTTTGATAAATCAACTTCATC 37684 ||| || ||| | | ||||| | | |||||| || ||||| || || || Sbjct 82721 GTTCCCCAACCTTG--AGCGACTCCCAATGTATGAGATCTTTGGACAAATCCACCTCTTC 82778 Query 37685 AACGGTCCAAAAA 37697 || ||||||||| Sbjct 82779 CACAGTCCAAAAA 82791 >seq65 Length=686715 Score = 82.4 bits (90), Expect = 9e-11 Identities = 72/90 (80%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 153287 AGGTGTTTTACATACAAAATTTTGGATAGTTGATAATAAACATGTATATATAGGAAGTGC 153346 ||| |||||||||||||| || ||| ||||||| ||| ||| ||| | || || || Sbjct 587103 AGGGGTTTTACATACAAAGTTATGGTCAGTTGATGCCAAAAATGGTTATGTGGGTAGCGC 587162 Query 153347 TAATATGGATTGGAGATCACTAACTCAAGT 153376 |||||||| |||||||||||||| ||||| Sbjct 587163 AAATATGGACTGGAGATCACTAACACAAGT 587192 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592095910257360