Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20haematobium_20[refseq_20GCF_5F000699445.1_202014-06- 09] 29,834 sequences; 375,894,156 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq1104 152 4e-32 seq26094 147 2e-30 seq523 125 6e-24 seq2294 113 4e-20 seq52 109 4e-19 >seq1104 Length=79538 Score = 152 bits (168), Expect = 4e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 ||||| | | ||| || || || ||||| || || ||||| || ||||||||||| | Sbjct 62405 CCTCCACGAAGACGCAACACCAAGTGAAGAGTGGACTCTTTCTGGATATTGTAATCAGAC 62346 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | |||| |||| ||||| || ||||| |||| ||||||||||||||| || Sbjct 62345 AATGTACGACCATCTTCCAGCTGCTTCCCAGCAAAGATCAGACGCTGTTGATCGGGTGGG 62286 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || ||||||||||||||||| || || ||| | || | |||||| || ||| ||| Sbjct 62285 ATTCCTTCTTTATCTTGAATCTTAGCCTTCACATTCTCAATGGTGTCACTCGGTTCGACT 62226 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || | ||||| |||||| || || || || || ||||| |||||||| Sbjct 62225 TCCAAAGTGATCGTTTTACCAGTCAATGTCTTCACAAAAATCTGCAT 62179 Score = 150 bits (166), Expect = 1e-31 Identities = 163/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313 ||| || || || ||||| || || ||||| || ||||||||||| | | || | | Sbjct 62166 ACGCAACACCAAGTGAAGAGTGGACTCTTTCTGGATATTGTAATCAGACAATGTACGACC 62107 Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373 ||| |||| ||||| || ||||| |||| ||||||||||||||| || || |||||||| Sbjct 62106 ATCTTCCAGCTGCTTCCCAGCAAAGATCAGACGCTGTTGATCGGGTGGGATTCCTTCTTT 62047 Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433 ||||||||| || || ||| | || | |||||| || ||| ||||| | ||||| Sbjct 62046 ATCTTGAATCTTAGCCTTCACATTCTCAATGGTGTCACTCGGTTCGACTTCCAAAGTGAT 61987 Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 |||||| || || || || || ||||| |||||||| Sbjct 61986 CGTTTTACCAGTCAATGTCTTCACAAAAATCTGCAT 61951 Score = 147 bits (162), Expect = 2e-30 Identities = 162/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313 ||| || || || ||||| || || ||||| || ||||||||||| | | || | | Sbjct 61710 ACGCAACACCAAGTGAAGAGTGGACTCTTTCTGGATATTGTAATCAGACAATGTACGACC 61651 Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373 ||| |||| ||||| || ||||| |||| ||||||||||||||| || || |||||||| Sbjct 61650 ATCTTCCAGCTGCTTCCCAGCAAAGATCAGACGCTGTTGATCGGGTGGGATTCCTTCTTT 61591 Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433 |||||| || || || ||| | || | |||||| || ||| ||||| | ||||| Sbjct 61590 ATCTTGGATCTTAGCCTTCACATTCTCAATGGTGTCACTCGGTTCGACTTCCAAAGTGAT 61531 Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 |||||| || || || || || ||||| |||||||| Sbjct 61530 CGTTTTACCAGTCAATGTCTTCACAAAAATCTGCAT 61495 Score = 147 bits (162), Expect = 2e-30 Identities = 162/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313 ||| || || || ||||| || || ||||| || ||||||||||| | | || | | Sbjct 61938 ACGCAACACCAAGTGAAGAGTGGACTCTTTCTGGATATTGTAATCAGACAATGTACGACC 61879 Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373 ||| |||| ||||| || ||||| |||| ||||||||||||||| || || |||||||| Sbjct 61878 ATCTTCCAGCTGCTTCCCAGCAAAGATCAGACGCTGTTGATCGGGTGGGATTCCTTCTTT 61819 Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433 |||||| || || || ||| | || | |||||| || ||| ||||| | ||||| Sbjct 61818 ATCTTGGATCTTAGCCTTCACATTCTCAATGGTGTCACTCGGTTCGACTTCCAAAGTGAT 61759 Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 |||||| || || || || || ||||| |||||||| Sbjct 61758 CGTTTTACCAGTCAATGTCTTCACAAAAATCTGCAT 61723 >seq26094 Length=224 Score = 147 bits (162), Expect = 2e-30 Identities = 162/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313 ||| || || || ||||| || || ||||| || ||||||||||| | | || | | Sbjct 216 ACGCAACACCAAGTGAAGAGTGGACTCTTTCTGGATATTGTAATCAGACAATGTACGACC 157 Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373 ||| |||| ||||| || ||||| |||| |||||| || ||||| ||||| |||||||| Sbjct 156 ATCTTCCAGCTGCTTCCCAGCAAAGATCAGACGCTGCTGGTCGGGTGGAATTCCTTCTTT 97 Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433 ||||||||| || || ||| | || | |||||| || ||| ||||| | ||||| Sbjct 96 ATCTTGAATCTTAGCCTTCACATTCTCAATGGTGTCACTCGGTTCGACTTCCAAAGTGAT 37 Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 |||||| || || || || || ||||| |||||||| Sbjct 36 CGTTTTACCAGTCAATGTCTTCACAAAAATCTGCAT 1 >seq523 Length=224339 Score = 125 bits (138), Expect = 6e-24 Identities = 150/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 101266 ATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTG 101325 |||||| || ||||| || |||||||| || |||| | ||||| |||| |||| ||| Sbjct 140051 ATGAAGTGTTGATTCCTTCTGTATATTATAGTCGGAAAGAGTTCGTCCATCTTCCAGTTG 140110 Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 || || ||||| || | ||| ||||| || || || ||||||||||||||||||||||| Sbjct 140111 TTTGCCAGCAAAAATTAGACGTTGTTGGTCTGGTGGGATGCCTTCTTTATCTTGAATTTT 140170 Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 || || ||||| || |||| | || ||||| || || | ||||| || || Sbjct 140171 CGCCTTAACTGCTTCTATTGTATCAGCAGGCTCAACTTCTAGGGTTATAGTTTTTCCCGT 140230 Query 101446 TAAAGTTTTTACAAATATCTGCAT 101469 | || || ||||| |||||||| Sbjct 140231 AAGTGTCTTCACAAAAATCTGCAT 140254 >seq2294 Length=11734 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 ||||| | || || | ||| | ||| | ||| || ||||| || || ||||| || | Sbjct 1568 CCTCCACGTAGGCGCAGAACAAGATGTAAGGTTGACTCTTTCTGGATGTTGTAGTCAGAC 1509 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | ||| | |||| ||||| |||||||| || ||||||||||| ||||| || || ||| Sbjct 1508 AGAGTACGTCCATCTTCCAACTGCTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGA 1449 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || |||||||| ||||||||||| ||| ||| | || | ||| ||| | || || Sbjct 1448 ATACCTTCTTTGTCTTGAATTTTAGCTTTCACATTCTCAATAGTATCACTAGGCTCAACC 1389 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || | | | ||| || || | || || || ||||| || ||||| Sbjct 1388 TCTAACGGAATCGTCTTACCAGGCAACGTCTTCACAAAGATTTGCAT 1342 Score = 109 bits (120), Expect = 4e-19 Identities = 126/170 (74%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 |||| || | || ||| | || | ||| || || || ||||| || || ||||| || | Sbjct 1342 TTCCACCACGTAGACGAAGGACAAGATGCAGAGTCGACTCTTTCTGGATGTTGTAGTCAG 1283 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 | ||| | |||| ||||| |||||||| || ||||||||||| ||||| || || | Sbjct 1282 ACAGAGTACGTCCATCTTCCAACTGCTTACCAGCGAATATCAAACGTTGTTGGTCAGGAG 1223 Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCA 101410 |||| |||||||| ||||||||||| ||| ||| | || | ||| ||| Sbjct 1222 GAATACCTTCTTTGTCTTGAATTTTAGCTTTCACATTCTCAATAGTATCA 1173 >seq52 Length=730220 Score = 109 bits (120), Expect = 4e-19 Identities = 125/168 (74%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 ||||| | || || | ||| | ||| | ||| || ||||| || || ||||| || | Sbjct 729734 CCTCCACGTAGGCGCAGAACAAGATGTAAGGTTGACTCTTTCTGGATGTTGTAGTCAGAC 729675 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | ||| | |||| ||||| |||||||| || ||||||||||| ||||| || || ||| Sbjct 729674 AGAGTACGTCCATCTTCCAACTGCTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGA 729615 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCA 101410 || |||||||| ||||||||||| ||| ||| | || | ||| ||| Sbjct 729614 ATACCTTCTTTGTCTTGAATTTTAGCTTTCACATTCTCAATAGTATCA 729567 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396134312430738