Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20haematobium_20[refseq_20GCF_5F000699445.1_202014-06- 09] 29,834 sequences; 375,894,156 total letters Query= NC_019726.1 Length=141836 Score E Sequences producing significant alignments: (Bits) Value seq3308 1142 0.0 seq8440 940 0.0 seq2836 538 3e-148 >seq3308 Length=2910 Score = 1142 bits (1266), Expect = 0.0 Identities = 722/790 (91%), Gaps = 6/790 (1%) Strand=Plus/Plus Query 80708 TCATGTTCATCATTTCCTTTTCTTTTAATTTGTTAAGTTCATTATATCATACAAACTAAA 80767 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 41 TCATGTTCATCATTTCCTTTTCTTTTAATTTGTTAAGTTCATTATATCATACAAATTAAA 100 Query 80768 AGATTGTAAAGCGTTTTGATAAAATAATTTAAACAAATGTTTGTATTAGTTCTTTAATCT 80827 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 101 ATATTGTAAAGCGTTTTGATAAAATAATTTAAACAAATGTTTGTATTAGTTCTTTAATCT 160 Query 80828 CCTCAGTGGATAATGATGATAGGTCATAAGCTTCTCTANNNNNNNNNNNNCTACCATATG 80887 ||||||| |||||||| ||||||||||||||||||||| |||||||||| Sbjct 161 CCTCAGTAGATAATGAAGATAGGTCATAAGCTTCTCTAAGCTCTTCTAAGCTACCATATG 220 Query 80888 AGCCATTACTATATGAAGCGGTGTTATTGTTCATCTGTATTGTTCCGCTTCCCTGTGTGC 80947 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 221 AGCCATTACTATATGAAGCGGTGTTATTGTTCATCTGTATTGTTCCGCTTCCCTGTGTGC 280 Query 80948 GTCTGTGTAGCTCCTCTGTGATGTAGTCATCTATGATTACATTNNNNNNNNNNNNNNNNN 81007 ||||||||||||| ||||||||||||||||||||||||||||| Sbjct 281 GTCTGTGTAGCTCTTCTGTGATGTAGTCATCTATGATTACATTATTAATATTATTAT--- 337 Query 81008 NNNGTTCCTGCAGGAGTTTGCTCTTTGCACTCTTAACGACATTATGAACCTCTCTAACGT 81067 |||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 338 ---GTTCCTGCAGGAGTTTGCTCTTTGCACTCTTAACGACATTATGAACCTCTCTAATGC 394 Query 81068 TCATTACTCATCATCACCAGTCATAACATCAACTAATACCATTAGCTCCTGCTTAGCCTT 81127 |||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| Sbjct 395 TCATTACTCATCATCACCAGTCATAACATCAACTAATATCATTAGCTCTTGCTTAGCCTT 454 Query 81128 TATTTGCTTCTCGAGTTGTTTATTCAACTCCTGCATAGTCTTCTTAGTATCTGCTATTTG 81187 |||||||||||||||||||||||||||||||||||||||||| | ||| ||||||||||| Sbjct 455 TATTTGCTTCTCGAGTTGTTTATTCAACTCCTGCATAGTCTTTTGAGTGTCTGCTATTTG 514 Query 81188 CTCATCTAATAATCTAACCGCTTCATTTAACGCTTTGTTTACCCTTCTTGTATTCATGTT 81247 |||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 515 CTCATCTAATAATCGAACCGCTTCGTTTAACGCTTTGTTTACCCTTCTTGTATTCATGTT 574 Query 81248 TTACATCTCCTCTAAAATATAATCTAAATCATTTCCGTAATAGCTTCTATATTCCTCTTC 81307 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 575 TTACATCTCCTCTAAAATATAATCTAAATCATTTCCGTAATAGCTTCTATATTCCTCTTC 634 Query 81308 TTCCATATCCATAACCTTACTAGCCCACTGTTTAGCATGTGCCATTGCATAGACCTTTTT 81367 ||||||||||||||| || | ||||| || |||||||| ||||||||| |||||||| Sbjct 635 TTCCATATCCATAACAATATTTGCCCATTGCTTAGCATGACTCATTGCATAAACCTTTTT 694 Query 81368 GCCTTCTTCCGATAACCCTAAGAATAACTCCGCTTCTAGAGAGTCATTATCTATTGTCCA 81427 ||| || || |||||| | ||||||| | ||||||||||||||||||||||||||||| Sbjct 695 GCCCTCATCTGATAACTCCAAGAATAGTTTAGCTTCTAGAGAGTCATTATCTATTGTCCA 754 Query 81428 ATCTTCCTCGATAGTACTATCAAACTCGATAGCAAATAATGTTTCGTATAGTTTATTAGC 81487 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 755 ATCTTCCTCGATAGTACTATCAAACTCGATAGCAAATAATGTTTCGTATAGTTTTTTAGC 814 Query 81488 ATTGTTTAAT 81497 || |||||| Sbjct 815 CTTTTTTAAT 824 Score = 856 bits (948), Expect = 0.0 Identities = 523/553 (95%), Gaps = 2/553 (0%) Strand=Plus/Plus Query 82357 CTTATTTGTTTTACCTTA-TGTATTAATATTAACATGTAAGGGGTTAAGTGTCAACCCCT 82415 ||||||||| || | | | | ||||||||||||||||||||||||||||||||||||| Sbjct 2359 CTTATTTGTATTTTTTAAATATCTTAATATTAACATGTAAGGGGTTAAGTGTCAACCCCT 2418 Query 82416 TATTTAGAttttttttAAACAGTTTCTGAGTTCTTTTTTAATTCGATTTGTAGGTCTAAT 82475 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 2419 TATTTAGATTTTTTT-AAACAGTTTCTGAGTTCTTTTTTAATTCGATTTGTAGGTCTAAT 2477 Query 82476 TCTCTAATCTGTGCGCAAGTTCTTTCAAATGCTTCATAGTATCCATTTGCTAATTCCTCA 82535 |||||||||||||| ||||||||||||||| ||||||||||| ||||||||||||||| Sbjct 2478 TCTCTAATCTGTGCACAAGTTCTTTCAAATCTGTCATAGTATCCGTTTGCTAATTCCTCA 2537 Query 82536 TCTGATTTTCTTTCTAGTCTCTCTAATTGGCTTTCTAATTGTTTGATTGTTTTTGTCATT 82595 ||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| Sbjct 2538 TCTGATTTTCTTTCTAGACTCTCTAATTAGCTTTCTAATTGTTTGATTGTTTTTGTCATT 2597 Query 82596 GTAATCATTTCCTTTTCTTTAGTATAGTTTAATATTATCATGAAGCGGTTAGTTTGTCAA 82655 ||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2598 GTAATTATTACCTTTTCTTTAGTATAGTTTAATATTATCATGAAGCGGTTAGTTTGTCAA 2657 Query 82656 CCGCTTATTTTAAtttttttCCATGCTTACATTTTCTTGACCGTACAGTTCACACCATTC 82715 | |||||||||||||||||||||||||||||||||||||||| || | ||||||||||| Sbjct 2658 CAGCTTATTTTAATTTTTTTCCATGCTTACATTTTCTTGACCATATAAGTCACACCATTC 2717 Query 82716 ACTATATTTTGCTTCTGCTTCCTGCTTGTTGAATGTTGCATACATAAACAATTCTTGATT 82775 |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2718 TTGATATTTGGCTTCTGCTTCCTGCTTGTTGAATGTTGCATACATAAACAATTCTTGATT 2777 Query 82776 AACTAGCGTTACAATTTCGTATCTCATAATTATCAATTCCTCTCATTTGGTATATATTAA 82835 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2778 AACTAACGTTACAATTTCGTATCTCATAATTATCAATTCCTCTCATTTGGTATATATTAA 2837 Query 82836 TATTAACATGGTAGGGGTTGAATGTCAACCCCTTTTATTAAttttttttATGCGTATTCT 82895 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 2838 TATTAACATGGTAGGGGTTGAATGTCAACCCCTTTTATTAAGTTTTTTTATGCGTATTCT 2897 Query 82896 TCGATTGCCTCAT 82908 |||||||| |||| Sbjct 2898 TCGATTGCTTCAT 2910 Score = 329 bits (364), Expect = 3e-85 Identities = 218/241 (90%), Gaps = 2/241 (1%) Strand=Plus/Plus Query 81984 TATTCTTCTAGTTCTTCCATAGTGTCCGAAAATTTGATTTGTTGTAAAGTGTGAGAAGTA 82043 |||||||||||| ||||||||||||||| |||||||||| |||| ||||| |||||| Sbjct 2136 TATTCTTCTAGTCCTTCCATAGTGTCCGCAAATTTGATTGACTGTAGAGTGTCAGAAGTC 2195 Query 82044 ATAACAACCGCTTCCTGGTCGTGTATTTCTTTATCTAGGATGTTATTATCTAAGTGGTCG 82103 | ||||||||||| ||||||| |||| | ||||||||||||||||||||||||||| Sbjct 2196 ACCACAACCGCTTCTTGGTCGTAAATTTTACTGTCTAGGATGTTATTATCTAAGTGGTCG 2255 Query 82104 ATGTACTCCCAAATTAAGGCTTGTTTTACGCTCTCAAGTGTTGCTATGCTAATTACGATT 82163 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 2256 ATGTACTCCCAAATTAGGGCTTGTTTTACGCTCTCAAGTGTTGCTATGCTAATTACGATT 2315 Query 82164 TCATTATCTCTATTGATTAATTTCATTTGTATCAATTCCTTTTCT--TTAGTATAGTTTA 82221 ||||||||||||||||||||||||||||||||||||||||||||| || |||| |||| Sbjct 2316 TCATTATCTCTATTGATTAATTTCATTTGTATCAATTCCTTTTCTTATTTGTATTTTTTA 2375 Query 82222 A 82222 | Sbjct 2376 A 2376 Score = 289 bits (320), Expect = 3e-73 Identities = 189/207 (91%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 81378 GATAACCCTAAGAATAACTCCGCTTCTAGAGAGTCATTATCTATTGTCCAATCTTCCTCG 81437 |||||| | ||||||| | |||||||||||||||||||||||||||||||||||||| Sbjct 1028 GATAACTCCAAGAATAGTTTATCTTCTAGAGAGTCATTATCTATTGTCCAATCTTCCTCG 1087 Query 81438 ATAGTACTATCAAACTCGATAGCAAATAATGTTTCGTATAGTTTATTAGCATTGTTTAAT 81497 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1088 ATAGTACTATCAAACTCGATAGCAAATAATGTTTCGTATAGTTTTTTAGCATTGTTTAAT 1147 Query 81498 TGTCTTGTTTTCATCTTCAACATCTCCTGGTTAATTGTATTAGAGAAGCGGTTAAGCTCC 81557 || | |||||||||||||||||||||| |||||||||||||||||||||||||||| | Sbjct 1148 TGGTTAATTTTCATCTTCAACATCTCCTGATTAATTGTATTAGAGAAGCGGTTAAGCTTC 1207 Query 81558 TC--TGTGAGTCTCTGTGTGCTTCCTA 81582 || |||| || ||||||||||||||| Sbjct 1208 TCTGTGTGTGTGTCTGTGTGCTTCCTA 1234 >seq8440 Length=882 Score = 940 bits (1042), Expect = 0.0 Identities = 719/844 (85%), Gaps = 29/844 (3%) Strand=Plus/Plus Query 83651 GTCTACAATGTATAGCACACCATCAACTTTAATACTGATAGCTTCTTGCTCATAGAATAC 83710 |||||||||||| | |||| |||||| ||||||||||| ||||| | || | | | Sbjct 61 GTCTACAATGTACAATGTGCCATTAACTTTGATACTGATAGCCTCTTGTCCGTAAACTTC 120 Query 83711 AATCAATTGTCTAGCAAT--CTTTGATAAGGCT--TGTAATAACCCTTGTTGGTCGTTCA 83766 ||| || |||| |||| |||| ||| | ||| || | | ||| | Sbjct 121 AATTAAACGTCTTACAATACCTTT--TAATTCAACTGTCATGAA---TTTTGCAC----- 170 Query 83767 TGTCTTGCATACCTTTGTCATAGTACCACTCAAGATTTAAGTTGTCATCTTCCATAATAC 83826 ||||||||| | || |||||||||||||||||||||| ||||||||| |||| Sbjct 171 TGTCTTGCAGA---------TAATACCACTCAAGATTTAAGTTGTTATCTTCCATTATAC 221 Query 83827 GTTGCTCATCGTCTGACCACCATTGTCCCTTGATTTCAGTTATCGTACAACCTCCACAT- 83885 ||| ||||| ||||| ||||||| || || ||||| || || |||||||| || | Sbjct 222 GTTTTTCATCTTCTGAGTACCATTGCCCTTTAATTTCTGTAATAGTACAACCGCCCGCTT 281 Query 83886 --ATTTTAGTTGCATTGTTAACCGCTTCTTTAATTGCAGGGCTTGAAATCTCTTTACCAC 83943 ||| | | ||| | ||||| ||||||||| | || |||||| || Sbjct 282 CCATTGT-GATGCTAT-TTAACTA-TTCTTTAATACGTTTGTCTGCAATCTCAACGCCGT 338 Query 83944 TATTAGTATATTTAGGTACGATAATTTCCACTTTATTTTGTAATTTAAACATTTTCATCA 84003 | ||| | ||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 339 TGTTATCTTCCTTAGGTACGATAATTTCCACTTTATTTTGTAATTTGAACATTTTCATCA 398 Query 84004 ATTCCTTTTCAGTTTATTTTGTCGTTGTGCTTGATTACCTTACAATTTAATAATAACATG 84063 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 399 ATTCCTTTTCAGTTTATTTTGTCGTTGTGCTTGATTACCTTACAATTTAATAATAACATG 458 Query 84064 GTAGGGCTTGAAAGTCAAGCCCTTTATTTAATTAATTTTCGTAAATGAATAAATCTTTGC 84123 |||||||||| ||||||||||||||||||||||||||||||||||||||||| | ||||| Sbjct 459 GTAGGGCTTGGAAGTCAAGCCCTTTATTTAATTAATTTTCGTAAATGAATAAGTTTTTGC 518 Query 84124 TTGGTAAGTATCTAAAGTTTGGCGCAATTCCTAAGCAATATACAAGTGTGTTTAAACTGT 84183 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 519 TTGGTAAGTATCTAAAGTTTGGCGCAATTCCTAAGCAATATACAAGTGTGTTTAAACTGT 578 Query 84184 CACGGTCTGAATTGCTTTCACCATAGTATGAAACAATTTCATTTAGGCTTAAGTCAATCT 84243 |||||||||||||||||||||| || ||||||||||| ||||||| |||||||||||||| Sbjct 579 CACGGTCTGAATTGCTTTCACCGTAATATGAAACAATCTCATTTATGCTTAAGTCAATCT 638 Query 84244 CAATTGTTTGTGTGCCCCAATGTCTCATAATTAATTTGTTGCCATTAATTTCTATTGCAT 84303 ||||||||||||| ||||| || | |||||| ||||||||||||| |||||| ||||||| Sbjct 639 CAATTGTTTGTGTACCCCAGTGACGCATAATCAATTTGTTGCCATCAATTTCAATTGCAT 698 Query 84304 ATTTTTCCTCAAGTTCACCTTTGCTATATCCGTCAAAGTAACGACCATTTAAAATTGCTT 84363 ||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||| Sbjct 699 ATTTTTCCTCAAGCTCACCTTTGCTATACCCGTCAAAGTAACGACCGTTTAAAATTGCTT 758 Query 84364 GCCCTTTGTTTTCTGCTTTAGTTAATAAGTTTTCGATAGTTTTGATAAATTTCATTATAA 84423 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 759 GCCCTTTGTTTTCTGCTTTTTCTAATAAGTTTTCGATAGTTTTGATAAATTTCATTATAA 818 Query 84424 TCAATTCCTTTTCTGTTTGTTTTTTGTTATCTTAATAATATCATGGTTTCAAGTGACTGT 84483 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 819 TCAATTCCTTTTCTGTTTGTTTTTTGTTATCTTAATAATATCATGGTTTCAAGTGACTGT 878 Query 84484 CAAT 84487 |||| Sbjct 879 CAAT 882 >seq2836 Length=4769 Score = 538 bits (596), Expect = 3e-148 Identities = 390/471 (83%), Gaps = 2/471 (0%) Strand=Plus/Plus Query 86823 AAGTGTAGTAAGGCAAGGGACAAACCCCAACCGCTTCTACAAATATTATATaaaaaaaTT 86882 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1287 AAGGGTAGTAAGGCAAGGGACAAACCCCAACCGCTTCTACAAATATTATATAAAAAAATT 1346 Query 86883 ATAAGAAAAGGATTTGATTTAAATGAAAATAAACTATATTCCAATGTGGGACAATGAAGA 86942 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1347 ATA-GAAAAGGATTTGATTTAAATGAAAATAAACTATATTCCAATGTGGGACAATGAAGA 1405 Query 86943 CGTATTACAATATGCAAAATCACAATTATTAGTAAATGAATTAGAAACAAAAGAAATTGT 87002 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1406 CGTATTACAATATGCAAAATCACAATTATTAGTAAATGAATTAGAAACAAAAGAAATTGT 1465 Query 87003 ATTCAAAAATTATCAAATATCAGATGATTTAGATGGCGGAACAGATAAAAAATATTATGA 87062 |||||||||||||||||||||||||||| | ||| |||||||||||||||||||||||| Sbjct 1466 ATTCAAAAATTATCAAATATCAGATGATATTGATAACGGAACAGATAAAAAATATTATGA 1525 Query 87063 AATATATGAAAGTAAATTTTATATAGATGAGGAAACAACAANNNNNNNNNNNNNNNNNNN 87122 |||||||||||||||||||||| |||||||||| ||||||| Sbjct 1526 AATATATGAAAGTAAATTTTATGTAGATGAGGATACAACAAAAGAAGAATTTAATAATTT 1585 Query 87123 NNNNNNAGAAAATGAAAAACTAGTAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 87182 ||||||||||||||||||||| Sbjct 1586 AATTATAGAAAATGAAAAACTAGTAAAAGACTATAAAACACAAAACGGATTAATTAAAAA 1645 Query 87183 NNNNNNNNNNTCACAACATGAAGTAAATGAATTTGAATACAATGTCATAAATATTCTATa 87242 ||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1646 TTTAATTAAATCACAACATGAAGTAAATGAATTTGAATACAATGTTATAAATATTCTATA 1705 Query 87243 aaaaaaTTATATAATACACTGGGAATAATA-TCCTAGTGTATTTATTTTTG 87292 ||||||||||| |||||||||||||||||| |||| |||||||| |||||| Sbjct 1706 AAAAAATTATACAATACACTGGGAATAATATTCCTGGTGTATTTTTTTTTG 1756 Score = 517 bits (572), Expect = 1e-141 Identities = 451/556 (81%), Gaps = 16/556 (3%) Strand=Plus/Plus Query 88115 CATAATTACCTCTATTGATAAGTAATATACCCTCCTCATTAACCGCTTCAATTAATCTA- 88173 ||||||||| ||||||||||||| ||| || ||||||||||||||||||| |||| Sbjct 2932 CATAATTACGG---TTGATAAGTAATACACCTTCTTCATTAACCGCTTCAATTAGTCTAA 2988 Query 88174 -----TCTATGTCTATATCATCATTCTTACTTCCAAACTCTTTATTATAGTGATTAGGGA 88228 |||||||||||| || ||| | || || || || |||| | | ||| Sbjct 2989 CTACATCTATGTCTATA-CAGAATTTTG--TTTCATACG---TAGTATAATCTGTTGGGT 3042 Query 88229 ATACATTACTAATATCTTTATACCAAGTTTCATATAAGAAGTATATTAAACTACTTCTAT 88288 ||| |||||| ||||| |||| |||||| | ||||||||||| |||||| ||||||| Sbjct 3043 ATATATTACTTATATCCTTATGCCAAGTCTTATATAAGAAGTCAATTAAATCACTTCTAC 3102 Query 88289 CTAGCTTATCCTTAATTGTTTTCATACTACCTCTATGATAAACTGTATAATATACTTTAA 88348 || | ||||||||| |||||||||||| ||||||| ||||||||||| || | Sbjct 3103 TTAAGTAATCCTTAATAGTTTTCATACTATTCTTATGATATACTGTATAATAAGTTTCTA 3162 Query 88349 ACATTACTTACATCTCCTTTACATATTCTTCCATACTATCTACACCTATTGATTTACCTC 88408 ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3163 CCATTAATTACATCTCCTTTACATATTCTTCCATACTATCTACACCTATTGATTTACCAT 3222 Query 88409 TATGGTATTCATGTATCCACGTCTCCGCTATAAATACACATACATCGTCTTTAAATTGAG 88468 || | || ||||||||||| || || |||||||||||||||||||| |||| ||| |||| Sbjct 3223 TACGATACTCATGTATCCATGTTTCAGCTATAAATACACATACATCATCTTCAAACTGAG 3282 Query 88469 GATGTAAACTTATTTCTTTTACTTCGTCTTTAGTATATCTAAATGGGCTAACATGTACAT 88528 ||||||| || ||||||| || || || || ||||||||||| || |||| |||||||| Sbjct 3283 GATGTAAGCTCATTTCTTCAACCTCATCCTTGGTATATCTAAAAGGACTAATATGTACAT 3342 Query 88529 CTAAGTTAGGATTCCTATTAACATCATAAGTTAGTTCTCTTGAAGCGGTCTCCTTAATCC 88588 |||| || | |||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 3343 CTAATCCTGGGCTTCTATTAACATCATAAGTTAGTTCTCTTGAAGCGGTCTCTTTAATCC 3402 Query 88589 ATTTTAATTCCGCTTTTAGTAAATCCTTATCATAATTTTCACTAAGGTATATCTCTATCA 88648 | || ||||| ||||| || |||||||||||||| |||| ||| || ||||| ||||||| Sbjct 3403 ACTTCAATTCTGCTTTGAGCAAATCCTTATCATAGTTTTTACTGAGATATATTTCTATCA 3462 Query 88649 TTAT-ATCTCCCCTTT 88663 |||| ||||| ||||| Sbjct 3463 TTATAATCTCTCCTTT 3478 Score = 425 bits (470), Expect = 5e-114 Identities = 303/347 (87%), Gaps = 6/347 (2%) Strand=Plus/Plus Query 86220 AGGTGTGTTGCTATCCCCTACACCTATTATATTACTATAGATGCTTGAGG---ATTGCAA 86276 ||||||||||||||||| |||| |||||||||||||| | ||| ||| ||||||| Sbjct 34 AGGTGTGTTGCTATCCCTTACATCTATTATATTACTACA---TCTTAAGGGGTATTGCAA 90 Query 86277 CCCCTATTTTTAAATTTCTTCAATGAATTTTATTTCTTTGTTTTGAACTCCGTACACTAC 86336 |||||||||||||||||||||||| |||||||||||||| || || || ||||| || Sbjct 91 CCCCTATTTTTAAATTTCTTCAATAAATTTTATTTCTTTATTCTGTACCCCGTAAACCGT 150 Query 86337 ATTTTCATATACGATTATAATTACATCGTCAATCACATTAACTAACATGCTAGCCGGTTG 86396 ||||||||||||||||||||| || || ||||| ||||| |||||||||||||||||||| Sbjct 151 ATTTTCATATACGATTATAATCACGTCATCAATTACATTTACTAACATGCTAGCCGGTTG 210 Query 86397 GCTTTGCCCTCTCATGCTCATTATAGGTGTTTTGCGGAACATCTGCACCGTGTCATAGTT 86456 |||||||||||||||||||||||| ||||| |||||||| || || ||||||||||| Sbjct 211 CGCTTGCCCTCTCATGCTCATTATAGGCGTTTTACGGAACATTTGAACAGTGTCATAGTT 270 Query 86457 TCCCTTAATAGAAACAATTAACGCCGTATATGTGCGTGTGTGGTTTAGTGTGCTTTCATA 86516 ||||||||| || ||||| ||||||||||||||||||||||||| |||||||||||| Sbjct 271 TCCCTTAATGCTTACGATTAAAGCCGTATATGTGCGTGTGTGGTTTAATGTGCTTTCATA 330 Query 86517 TAATGGTGGTTCTGTACATCTGTAGCCGTCCATTTGCCACAACTCCA 86563 |||| | ||||||||||||||||| |||||||||||| ||||||||| Sbjct 331 TAATTGCGGTTCTGTACATCTGTATCCGTCCATTTGCAACAACTCCA 377 Score = 293 bits (324), Expect = 2e-74 Identities = 196/216 (91%), Gaps = 3/216 (1%) Strand=Plus/Plus Query 86598 AATCATCTCCAATTAAATAAtttttttATATAATTCTAATATCTTGTTGCTGTTCCCTTG 86657 |||| ||||||||| |||||||||| |||||||| ||| || ||||||||||||| |||| Sbjct 733 AATCGTCTCCAATTGAATAATTTTTGTATATAATGCTACTACCTTGTTGCTGTTCTCTTG 792 Query 86658 CTGTACCTTTATATTACTACCATATAATAAAAAAGTCAATAAGAAAATGCAAATTCtttt 86717 ||||||||||||||||||| ||||| || || ||||||||||||||||| |||||||||| Sbjct 793 CTGTACCTTTATATTACTATCATATGATTAATAAGTCAATAAGAAAATGTAAATTCTTTT 852 Query 86718 aaaaa--catttttagggctaaaaactactattatatggaagaaaaaagaattt-aaaaa 86774 ||||| |||||||||||||||||||||||||||| |||||||||||||||| ||||| Sbjct 853 AAAAAACTTTTTTTAGGGCTAAAAACTACTATTATATAGAAGAAAAAAGAATTTAAAAAA 912 Query 86775 aaGTTACTCAAAAGTATTGACTTCTGAATAACTATA 86810 ||||||||||||||| ||||||||||||||||||| Sbjct 913 AAGTTACTCAAAAGTTGTGACTTCTGAATAACTATA 948 Score = 190 bits (210), Expect = 2e-43 Identities = 132/147 (90%), Gaps = 2/147 (1%) Strand=Plus/Plus Query 88637 ATATCTCTATCATTATATCTCCCCTTTCAATTCTAAGCCCTCTCATCCTTCCATACAGAA 88696 |||| | ||||||||||||| ||||||||||||||||||||||| ||||||||| |||| Sbjct 4028 ATATATGAATCATTATATCTCTCCTTTCAATTCTAAGCCCTCTCAGCCTTCCATAGAGAA 4087 Query 88697 GCGGT-ATACATTTTCTAGTACAATTTATCCTGAACTACTTAACCGCTTCTTAAATGAGC 88755 ||||| ||| | ||||||| ||||||||| ||||||||||||||||||||||||||||| Sbjct 4088 GCGGTAATATA-TTTCTAGACCAATTTATCATGAACTACTTAACCGCTTCTTAAATGAGC 4146 Query 88756 TCTATATTCCAAGTATAGCTAATACAC 88782 |||| || ||||||||||||||| ||| Sbjct 4147 TCTAAATGCCAAGTATAGCTAATGCAC 4173 Score = 170 bits (188), Expect = 2e-37 Identities = 121/135 (90%), Gaps = 3/135 (2%) Strand=Plus/Plus Query 89854 TTATATACTAATTATAACATACCCGCTTCATAGTTGTCAACAATTAATTACAATTGAAGC 89913 ||||||||||| ||||||| ||| ||||||||||||||||||||||||| ||||||||| Sbjct 4637 TTATATACTAAGTATAACAGACC-GCTTCATAGTTGTCAACAATTAATTGTAATTGAAGC 4695 Query 89914 GGGTTATCTTTCAATATTCTCAATTATAGAACCCTAAATGATAA-GGAGCTACTTACTAT 89972 || |||||| |||||||||||||||| | |||||||||||| || |||||||||||| Sbjct 4696 -GGATATCTTCTAATATTCTCAATTATACAGACCTAAATGATAAGGGGGCTACTTACTAT 4754 Query 89973 TTTAGGTACATTAAA 89987 ||||||||||||||| Sbjct 4755 TTTAGGTACATTAAA 4769 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 453577986325440