Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20haematobium_20[refseq_20GCF_5F000699445.1_202014-06- 09] 29,834 sequences; 375,894,156 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq4589 194 1e-43 seq2017 187 2e-41 seq523 147 1e-29 seq2294 100 2e-15 seq1104 93.3 3e-13 seq52 91.5 1e-12 seq26094 89.7 3e-12 >seq4589 Length=1669 Score = 194 bits (214), Expect = 1e-43 Identities = 379/555 (68%), Gaps = 14/555 (3%) Strand=Plus/Minus Query 474329 GCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAA 474388 || ||||| || ||| | || || || || ||||| | ||||| || |||| ||| Sbjct 819 GCCATTGGGATCGATCTTGGTACAACATATTCGTGTGTTGGTGTTTTCCAGCATGGCAAA 760 Query 474389 GTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACT 474448 || || |||||||||||||| || ||||| ||||| ||||| ||||| | || || Sbjct 759 GTGGAGATAATTGCCAATGATCAGGGTAACAGAACGACACCGAGTTATGTGGCGTTCACA 700 Query 474449 GAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAAT 474508 || |||| | | | ||||| |||| || || | |||| || |||||| ||| Sbjct 699 GATGCTGAGCGTTTAATTGGTGATGGAGCGAAGAACCAAGTGGCTATTAATCCAACAAAT 640 Query 474509 ACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCT 474568 || | |||||||| || | | || |||||| ||| |||||| | | || || | Sbjct 639 ACAGTGTTTGATGCGAAGCGGCTAATCGGTCGTCGTTTCGATGATCCATCAGTTCAGAGT 580 Query 474569 GATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGAAG-- 474626 |||||| |||||||| ||| ||||| | | || |||||||| | | || | Sbjct 579 GATATGAAGCATTGGCCATTTGAGGTGGTTCAAGTCGGTGGTAAGCTGAAGATTCGTGTT 520 Query 474627 CAATACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAG 474686 | || | | ||||| | || || || |||| | ||||| || ||||| || Sbjct 519 GAGTATAAG--GGTGAGAAAAAGTTGTTCTCCGCGGAGGAGATTTCGTCGATGGTGTTGA 462 Query 474687 CCAAAATGAAACAAACCGCGAGCTCA----TATCTTGGACAAGA-AGTAACTGATGCAGT 474741 | |||||||| | | ||| | ||| |||| || || ||||| ||| || || Sbjct 461 CGAAAATGAAGGA----GGTTGCTGAAAGTTAT-TTGGGCAGGACAGTAAGTGACGCGGT 407 Query 474742 AATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAG 474801 || || ||||| || || || ||||| ||||||||||||||| |||||||| || Sbjct 406 TATAACAGTTCCTGCTTACTTCAATGACAGTCAACGTCAAGCAACGAAAGATGCAGGTGC 347 Query 474802 AATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTA 474861 || || ||||||||||| || | || |||||||| || ||||| || ||| |||| || Sbjct 346 TATAGCTGGTCTTAATGTGTTGAGAATCATTAATGAGCCGACAGCTGCGGCAATTGCCTA 287 Query 474862 TGGTCTTGATAAGAA 474876 |||| | || ||||| Sbjct 286 TGGTTTAGACAAGAA 272 >seq2017 Length=18414 Score = 187 bits (206), Expect = 2e-41 Identities = 371/539 (69%), Gaps = 14/539 (3%) Strand=Plus/Plus Query 474388 AGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTAC 474447 ||| || || ||||| ||||| || ||||| || | || || ||||| || | || || Sbjct 4168 AGTTGAGATTATTGCGAATGATCAGGGTAACAGGATTACTCCCTCATACGTAGCATTCAC 4227 Query 474448 T---GAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTG-CATCTAATCCTG 474503 | ||| || | | ||||| |||||||||||| | || |||| |||| ||||| | Sbjct 4228 TCCGGAAGGCGAGCGATTAATTGGGGATGCTGCTAAAAACCA-GCTGACATCAAATCCAG 4286 Query 474504 TTAATACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCC 474563 || || ||||| || | || ||| | ||||| | || || ||||| | ||||| | Sbjct 4287 AAAACACAATTTTCGACGTCAAGAGACTTATTGGAAGGAAGTTCGATGAATCAACTGTAC 4346 Query 474564 AATCTGATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAG 474623 || ||| || ||||| |||||| || | ||| ||||||||||| | Sbjct 4347 AAAATGACATAACTCATTACCCTTTTTCCGTTGTTAATAAAAAGAACAAACCATATATCG 4406 Query 474624 AAGCAATACACGCAGG-TGA-AACTAAACAATTTT-CACCGGAACAAATTTCTTCAATGG 474680 ||| | |||| || | | || | || | ||| | || || | || ||| | |||| Sbjct 4407 AAG---TTCACGTTGGATCAGAAGTCAAGACGTTTGCCCCAGAGGAGATCTCTGCTATGG 4463 Query 474681 TTTTAGCCAAAATGAAACAAACCGCGAGCTCATATCTTGGACAAGAAGTAACTGATGCAG 474740 | |||| || |||||| | || || |||||||| || | || || |||||| Sbjct 4464 TGTTAGGGAAGATGAAAGAGTTTGCTGAATCCTATCTTGGCAAAAAGGTTACCCATGCAG 4523 Query 474741 TAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAA 474800 || | ||||| ||||| |||||||| ||| | || || || ||||| |||||||| || | Sbjct 4524 TAGTCACTGTCCCAGCCTATTTTAACGATGCACAGCGCCAGGCAACCAAAGATGCTGGCA 4583 Query 474801 GAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTT 474860 |||||| ||| | ||| | | || || |||||||||||||| || || || |||||| Sbjct 4584 CAATTGCTGGTTTGAATATACTCCGGATCATTAATGAACCAACTGCTGCTGCGATTGCTT 4643 Query 474861 ATGGTCTTGATAAGAATTCTGACAAAGAAGTAAATGTTTTAATCTTTGATTGTGGAGGT 474919 | ||||| |||||||| || ||||| ||| || | || |||||| ||||||| Sbjct 4644 ACGGTCTAGATAAGAAAGATG-GTGAGAAG--AATATTCTGATATTTGATCTTGGAGGT 4699 Score = 98.7 bits (108), Expect = 6e-15 Identities = 318/489 (65%), Gaps = 20/489 (4%) Strand=Plus/Plus Query 475875 TTGTACTTGTTGACGTAACTCCACTTTCATTAGGTCTTGAAACAGTTGGAGGGATTATGA 475934 |||| ||| | || ||| ||| | | || ||| ||||||| || || || | |||| Sbjct 5256 TTGTGCTTTTAGATGTATGCCCATTGACTTTGGGTATTGAAACGGTCGGTGGTGTCATGA 5315 Query 475935 CTAATCTTATTGACAGAAATACTCCTATCCCATGCAAAAAATCAAAAGTATTTTCCACTT 475994 | || |||||| |||||||| ||||||| ||| || || | ||||||| || Sbjct 5316 CGAAACTTATTCCAAGAAATACAGTTATCCCAACCAAGAAGTCGCAGATATTTTCTACAG 5375 Query 475995 ATTCTGATAATCAAACAACTGTAACCATCCAAATCTTTGAAGGTGAAAGAAAATTCACTA 476054 | |||| || || | ||||| || || ||| | ||||| |||||| | | || | Sbjct 5376 CTGCTGACAACCAGCCGACTGTCACGATACAAGTTTTTGAGGGTGAACGGGCTATGAC-A 5434 Query 476055 AAGAT-AATAACAAACTTGGAACTTTTAATCTTGAAGGTATTCCTCCTGCTCCCAGAGGA 476113 ||| | ||| | ||||| | ||| | || |||||||||||| || | | || Sbjct 5435 AAGTTCAATCATTTTCTTGGCAAGTTTGACCTGACAGGTATTCCTCCGGCACTGCGTGGT 5494 Query 476114 GTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAATGGTATTCTTAATGTTACTGCT 476173 ||||| |||||||| || || || || ||||| | || || || || | ||| | ||| Sbjct 5495 GTTCCACAAATTGAGGTGACGTTCGAGATTGACGTTAACGGCATACTGAGAGTTTCCGCT 5554 Query 476174 TGTGATAAA------TCTAGTAACAAGAGTAAAAATATAACT-ATTACAAACAATCGTGG 476226 |||||| |||||| || |||||| || | | || | || | | | | Sbjct 5555 GAAGATAAAGGGACCGGTAGTAAAAA----CAAAATAGAAATCAATAAAGACCAACATCG 5610 Query 476227 --TAGATTTACTGAAGAACAAATTCAACGTATGGTTGATGAAGCCAAAGAGTTTGAAGAA 476284 |||| || |||| |||| || ||| || |||| || || |||||| || Sbjct 5611 CTTAGA-----TGCAGAAGAAATCGAAAAAATGATTAATGATGCAGAACAGTTTGCAGCT 5665 Query 476285 GCTGATAACAAGAGAAAAGCTGCTATTGATGCAAAGAATGAACTTGAAAATTATGTTCAT 476344 | ||||| ||| ||||| | ||||||| | ||||| | |||| || || | || Sbjct 5666 TCAGATAAGAAGTTAAAAGAGCGTGTTGATGCCAGAAATGAGTTCGAAAGTTCTGCTTAT 5725 Query 476345 AGTGTAAAA 476353 | | | ||| Sbjct 5726 ACTCTCAAA 5734 >seq523 Length=224339 Score = 147 bits (162), Expect = 1e-29 Identities = 164/219 (75%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 |||||||||||| |||||||||||||| ||| || | |||||| || | ||||| Sbjct 140033 ACGAAGACGGAGGACAAGATGAAGTGTTGATTCCTTCTGTATATTATAGTCGGAAAGAGT 140092 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 || |||||| ||||| || ||||||||||| ||||||||||| || || || || || Sbjct 140093 TCGTCCATCTTCCAGTTGTTTGCCAGCAAAAATTAGACGTTGTTGGTCTGGTGGGATGCC 140152 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAG 480730 ||| || |||||||| || || || ||||| || ||||||| | | ||| || Sbjct 140153 TTCTTTATCTTGAATTTTCGCCTTAACTGCTTCTATTGTATCAGCAGGCTCAACTTCTAG 140212 Query 480731 GGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||| |||||||| || || || ||||| || ||||| || Sbjct 140213 GGTTATAGTTTTTCCCGTAAGTGTCTTCACAAAAATCTG 140251 >seq2294 Length=11734 Score = 100 bits (110), Expect = 2e-15 Identities = 120/163 (74%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||| ||||| || |||||||| || || ||||| | || || |||| ||||| Sbjct 1335 ACGTAGACGAAGGACAAGATGCAGAGTCGACTCTTTCTGGATGTTGTAGTCAGACAGAGT 1276 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | |||||| | ||||| ||||| || || | ||||||||| ||||||||||| || Sbjct 1275 ACGTCCATCTTCCAACTGCTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGAATACC 1216 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCA 480713 ||| ||||||||||| || ||| ||| |||||||||||| Sbjct 1215 TTCTTTGTCTTGAATTTTAGCTTTCACATTCTCAATAGTATCA 1173 Score = 93.3 bits (102), Expect = 3e-13 Identities = 154/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||| || || || |||||||| | || ||||| | || || |||| ||||| Sbjct 1563 ACGTAGGCGCAGAACAAGATGTAAGGTTGACTCTTTCTGGATGTTGTAGTCAGACAGAGT 1504 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | |||||| | ||||| ||||| || || | ||||||||| ||||||||||| || Sbjct 1503 ACGTCCATCTTCCAACTGCTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGAATACC 1444 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGT-GTGTGAAGTTTCAA 480729 ||| ||||||||||| || ||| ||| |||||||||||| | | | || | || Sbjct 1443 TTCTTTGTCTTGAATTTTAGCTTTCACATTCTCAATAGTATCACTAGGCTCAACCTCTAA 1384 Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || ||| || ||||| | | ||||| || || ||||| Sbjct 1383 CGG-AATCGTCTTACCAGGCAACGTCTTCACAAAGATTTG 1345 >seq1104 Length=79538 Score = 93.3 bits (102), Expect = 3e-13 Identities = 152/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||||||||| | || | ||||| || ||||| | ||| ||||||| | || Sbjct 62172 ACGAAGACGCAACACCAAGTGAAGAGTGGACTCTTTCTGGATATTGTAATCAGACAATGT 62113 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | |||||| || ||||| |||||||| || ||||| |||||||| || || ||||| Sbjct 62112 ACGACCATCTTCCAGCTGCTTCCCAGCAAAGATCAGACGCTGTTGATCGGGTGGGATTCC 62053 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAG 480730 ||| || ||||||||||| || ||| ||||| || ||| | || ||| | Sbjct 62052 TTCTTTATCTTGAATCTTAGCCTTCACATTCTCAATGGTGTCACTCGGTTCGACTTCCAA 61993 Query 480731 GGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || |||||||| || | ||||| || ||||| || Sbjct 61992 AGTGATCGTTTTACCAGTCAATGTCTTCACAAAAATCTG 61954 Score = 93.3 bits (102), Expect = 3e-13 Identities = 152/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||||||||| | || | ||||| || ||||| | ||| ||||||| | || Sbjct 62400 ACGAAGACGCAACACCAAGTGAAGAGTGGACTCTTTCTGGATATTGTAATCAGACAATGT 62341 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | |||||| || ||||| |||||||| || ||||| |||||||| || || ||||| Sbjct 62340 ACGACCATCTTCCAGCTGCTTCCCAGCAAAGATCAGACGCTGTTGATCGGGTGGGATTCC 62281 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAG 480730 ||| || ||||||||||| || ||| ||||| || ||| | || ||| | Sbjct 62280 TTCTTTATCTTGAATCTTAGCCTTCACATTCTCAATGGTGTCACTCGGTTCGACTTCCAA 62221 Query 480731 GGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || |||||||| || | ||||| || ||||| || Sbjct 62220 AGTGATCGTTTTACCAGTCAATGTCTTCACAAAAATCTG 62182 >seq52 Length=730220 Score = 91.5 bits (100), Expect = 1e-12 Identities = 118/163 (72%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||| || || || |||||||| | || ||||| | || || |||| ||||| Sbjct 729729 ACGTAGGCGCAGAACAAGATGTAAGGTTGACTCTTTCTGGATGTTGTAGTCAGACAGAGT 729670 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | |||||| | ||||| ||||| || || | ||||||||| ||||||||||| || Sbjct 729669 ACGTCCATCTTCCAACTGCTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGAATACC 729610 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCA 480713 ||| ||||||||||| || ||| ||| |||||||||||| Sbjct 729609 TTCTTTGTCTTGAATTTTAGCTTTCACATTCTCAATAGTATCA 729567 >seq26094 Length=224 Score = 89.7 bits (98), Expect = 3e-12 Identities = 151/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||||||||| | || | ||||| || ||||| | ||| ||||||| | || Sbjct 222 ACGAAGACGCAACACCAAGTGAAGAGTGGACTCTTTCTGGATATTGTAATCAGACAATGT 163 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | |||||| || ||||| |||||||| || ||||| || || || || |||||||| Sbjct 162 ACGACCATCTTCCAGCTGCTTCCCAGCAAAGATCAGACGCTGCTGGTCGGGTGGAATTCC 103 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAG 480730 ||| || ||||||||||| || ||| ||||| || ||| | || ||| | Sbjct 102 TTCTTTATCTTGAATCTTAGCCTTCACATTCTCAATGGTGTCACTCGGTTCGACTTCCAA 43 Query 480731 GGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || |||||||| || | ||||| || ||||| || Sbjct 42 AGTGATCGTTTTACCAGTCAATGTCTTCACAAAAATCTG 4 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3266899474985432