Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20haematobium_20[refseq_20GCF_5F000699445.1_202014-06- 09] 29,834 sequences; 375,894,156 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq1104 163 6e-35 seq26094 143 5e-29 seq523 114 3e-20 >seq1104 Length=79538 Score = 163 bits (180), Expect = 6e-35 Identities = 174/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | |||||| || || || || | ||| | |||||| |||||| |||||| Sbjct 61724 ATACCACCACGAAGACGCAACACCAAGTGAAGAGTGGACTCTTTCTGGATATTGTAATCA 61665 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || ||||| || |||| |||| || || ||||||||||| | | ||||||||| ||| Sbjct 61664 GACAATGTACGACCATCTTCCAGCTGCTTCCCAGCAAAGATCAGACGCTGTTGATCGGGT 61605 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || ||||||||||||||||| || ||| || ||||| || | || || ||| Sbjct 61604 GGGATTCCTTCTTTATCTTGGATCTTAGCCTTCACATTCTCAATGGTGTCACTCGGTTCG 61545 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| | ||| || ||||||||||| ||||| || | ||| |||||||| Sbjct 61544 ACTTCCAAAGTGATCGTTTTACCAGTCAATGTCTTCACAAAAATCTGCAT 61495 Score = 163 bits (180), Expect = 6e-35 Identities = 174/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | |||||| || || || || | ||| | |||||| |||||| |||||| Sbjct 61952 ATACCACCACGAAGACGCAACACCAAGTGAAGAGTGGACTCTTTCTGGATATTGTAATCA 61893 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || ||||| || |||| |||| || || ||||||||||| | | ||||||||| ||| Sbjct 61892 GACAATGTACGACCATCTTCCAGCTGCTTCCCAGCAAAGATCAGACGCTGTTGATCGGGT 61833 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || ||||||||||||||||| || ||| || ||||| || | || || ||| Sbjct 61832 GGGATTCCTTCTTTATCTTGGATCTTAGCCTTCACATTCTCAATGGTGTCACTCGGTTCG 61773 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| | ||| || ||||||||||| ||||| || | ||| |||||||| Sbjct 61772 ACTTCCAAAGTGATCGTTTTACCAGTCAATGTCTTCACAAAAATCTGCAT 61723 Score = 163 bits (180), Expect = 6e-35 Identities = 174/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | |||||| || || || || | ||| | |||||| |||||| |||||| Sbjct 62180 ATACCACCACGAAGACGCAACACCAAGTGAAGAGTGGACTCTTTCTGGATATTGTAATCA 62121 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || ||||| || |||| |||| || || ||||||||||| | | ||||||||| ||| Sbjct 62120 GACAATGTACGACCATCTTCCAGCTGCTTCCCAGCAAAGATCAGACGCTGTTGATCGGGT 62061 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || ||||||||||||||||| || ||| || ||||| || | || || ||| Sbjct 62060 GGGATTCCTTCTTTATCTTGAATCTTAGCCTTCACATTCTCAATGGTGTCACTCGGTTCG 62001 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| | ||| || ||||||||||| ||||| || | ||| |||||||| Sbjct 62000 ACTTCCAAAGTGATCGTTTTACCAGTCAATGTCTTCACAAAAATCTGCAT 61951 Score = 154 bits (170), Expect = 3e-32 Identities = 171/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 ||| || | |||||| || || || || | ||| | |||||| |||||| |||||||| Sbjct 62406 ACCTCCACGAAGACGCAACACCAAGTGAAGAGTGGACTCTTTCTGGATATTGTAATCAGA 62347 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 ||||| || |||| |||| || || ||||||||||| | | ||||||||| ||||| Sbjct 62346 CAATGTACGACCATCTTCCAGCTGCTTCCCAGCAAAGATCAGACGCTGTTGATCGGGTGG 62287 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 ||||||||||||||||| || ||| || ||||| || | || || ||| || Sbjct 62286 GATTCCTTCTTTATCTTGAATCTTAGCCTTCACATTCTCAATGGTGTCACTCGGTTCGAC 62227 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||| | ||| || ||||||||||| ||||| || | ||| |||||||| Sbjct 62226 TTCCAAAGTGATCGTTTTACCAGTCAATGTCTTCACAAAAATCTGCAT 62179 >seq26094 Length=224 Score = 143 bits (158), Expect = 5e-29 Identities = 163/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 192318 AAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGATAATGTTCG 192377 |||||| || || || || | ||| | |||||| |||||| |||||||| ||||| || Sbjct 219 AAGACGCAACACCAAGTGAAGAGTGGACTCTTTCTGGATATTGTAATCAGACAATGTACG 160 Query 192378 TTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTC 192437 |||| |||| || || ||||||||||| | | ||| || || ||||| |||||||| Sbjct 159 ACCATCTTCCAGCTGCTTCCCAGCAAAGATCAGACGCTGCTGGTCGGGTGGAATTCCTTC 100 Query 192438 TTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGT 192497 ||||||||| || ||| || ||||| || | || || ||| ||||| | ||| Sbjct 99 TTTATCTTGAATCTTAGCCTTCACATTCTCAATGGTGTCACTCGGTTCGACTTCCAAAGT 40 Query 192498 AATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || ||||||||||| ||||| || | ||| |||||||| Sbjct 39 GATCGTTTTACCAGTCAATGTCTTCACAAAAATCTGCAT 1 >seq523 Length=224339 Score = 114 bits (126), Expect = 3e-20 Identities = 165/233 (71%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 192304 ATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAA 192363 || |||||||| | |||||| | || | ||| | || | || || |||||||| Sbjct 140022 ATTATACCACCACGAAGACGGAGGACAAGATGAAGTGTTGATTCCTTCTGTATATTATAG 140081 Query 192364 TCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCA 192423 || || | |||||| |||| |||| |||||| |||||||| |||| | ||||| || Sbjct 140082 TCGGAAAGAGTTCGTCCATCTTCCAGTTGTTTGCCAGCAAAAATTAGACGTTGTTGGTCT 140141 Query 192424 GGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGAT 192483 ||||| || |||||||||||||| ||||| || || ||| | ||| | | Sbjct 140142 GGTGGGATGCCTTCTTTATCTTGAATTTTCGCCTTAACTGCTTCTATTGTATCAGCAGGC 140201 Query 192484 TCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || |||||||| || || ||||| || || | ||| || | ||| |||||||| Sbjct 140202 TCAACTTCTAGGGTTATAGTTTTTCCCGTAAGTGTCTTCACAAAAATCTGCAT 140254 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984103684365900