Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20haematobium_20[refseq_20GCF_5F000699445.1_202014-06- 09] 29,834 sequences; 375,894,156 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq1104 127 4e-24 seq26094 116 7e-21 seq523 114 2e-20 seq2294 100 5e-16 seq52 89.7 9e-13 >seq1104 Length=79538 Score = 127 bits (140), Expect = 4e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | ||| || || || || || | ||| | |||||| ||||| ||||| Sbjct 61724 ATACCACCACGAAGACGCAACACCAAGTGAAGAGTGGACTCTTTCTGGATATTGTAATCA 61665 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || || | || | || |||| || || |||||||| || | | |||||| || ||| Sbjct 61664 GACAATGTACGACCATCTTCCAGCTGCTTCCCAGCAAAGATCAGACGCTGTTGATCGGGT 61605 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || ||||||||||||||||| || ||| || ||||| || || || || ||| Sbjct 61604 GGGATTCCTTCTTTATCTTGGATCTTAGCCTTCACATTCTCAATGGTGTCACTCGGTTCG 61545 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| | ||| || ||||||||||| ||||| || | || |||||||| Sbjct 61544 ACTTCCAAAGTGATCGTTTTACCAGTCAATGTCTTCACAAAAATCTGCAT 61495 Score = 127 bits (140), Expect = 4e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | ||| || || || || || | ||| | |||||| ||||| ||||| Sbjct 61952 ATACCACCACGAAGACGCAACACCAAGTGAAGAGTGGACTCTTTCTGGATATTGTAATCA 61893 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || || | || | || |||| || || |||||||| || | | |||||| || ||| Sbjct 61892 GACAATGTACGACCATCTTCCAGCTGCTTCCCAGCAAAGATCAGACGCTGTTGATCGGGT 61833 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || ||||||||||||||||| || ||| || ||||| || || || || ||| Sbjct 61832 GGGATTCCTTCTTTATCTTGGATCTTAGCCTTCACATTCTCAATGGTGTCACTCGGTTCG 61773 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| | ||| || ||||||||||| ||||| || | || |||||||| Sbjct 61772 ACTTCCAAAGTGATCGTTTTACCAGTCAATGTCTTCACAAAAATCTGCAT 61723 Score = 127 bits (140), Expect = 4e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | ||| || || || || || | ||| | |||||| ||||| ||||| Sbjct 62180 ATACCACCACGAAGACGCAACACCAAGTGAAGAGTGGACTCTTTCTGGATATTGTAATCA 62121 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || || | || | || |||| || || |||||||| || | | |||||| || ||| Sbjct 62120 GACAATGTACGACCATCTTCCAGCTGCTTCCCAGCAAAGATCAGACGCTGTTGATCGGGT 62061 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || ||||||||||||||||| || ||| || ||||| || || || || ||| Sbjct 62060 GGGATTCCTTCTTTATCTTGAATCTTAGCCTTCACATTCTCAATGGTGTCACTCGGTTCG 62001 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| | ||| || ||||||||||| ||||| || | || |||||||| Sbjct 62000 ACTTCCAAAGTGATCGTTTTACCAGTCAATGTCTTCACAAAAATCTGCAT 61951 Score = 118 bits (130), Expect = 2e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 171842 ACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGA 171901 ||| || | ||| || || || || || | ||| | |||||| ||||| ||||| || Sbjct 62406 ACCTCCACGAAGACGCAACACCAAGTGAAGAGTGGACTCTTTCTGGATATTGTAATCAGA 62347 Query 171902 TAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGG 171961 || | || | || |||| || || |||||||| || | | |||||| || ||||| Sbjct 62346 CAATGTACGACCATCTTCCAGCTGCTTCCCAGCAAAGATCAGACGCTGTTGATCGGGTGG 62287 Query 171962 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTAC 172021 ||||||||||||||||| || ||| || ||||| || || || || ||| || Sbjct 62286 GATTCCTTCTTTATCTTGAATCTTAGCCTTCACATTCTCAATGGTGTCACTCGGTTCGAC 62227 Query 172022 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||| | ||| || ||||||||||| ||||| || | || |||||||| Sbjct 62226 TTCCAAAGTGATCGTTTTACCAGTCAATGTCTTCACAAAAATCTGCAT 62179 >seq26094 Length=224 Score = 116 bits (128), Expect = 7e-21 Identities = 157/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 171851 AAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCG 171910 ||| || || || || || | ||| | |||||| ||||| ||||| || || | || Sbjct 219 AAGACGCAACACCAAGTGAAGAGTGGACTCTTTCTGGATATTGTAATCAGACAATGTACG 160 Query 171911 TTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTC 171970 | || |||| || || |||||||| || | | ||| ||||| ||||| |||||||| Sbjct 159 ACCATCTTCCAGCTGCTTCCCAGCAAAGATCAGACGCTGCTGGTCGGGTGGAATTCCTTC 100 Query 171971 TTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGT 172030 ||||||||| || ||| || ||||| || || || || ||| ||||| | ||| Sbjct 99 TTTATCTTGAATCTTAGCCTTCACATTCTCAATGGTGTCACTCGGTTCGACTTCCAAAGT 40 Query 172031 AATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || ||||||||||| ||||| || | || |||||||| Sbjct 39 GATCGTTTTACCAGTCAATGTCTTCACAAAAATCTGCAT 1 >seq523 Length=224339 Score = 114 bits (126), Expect = 2e-20 Identities = 165/233 (71%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 171837 ATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAA 171896 || |||||||| | ||| || | || | ||| | || | || || |||||||| Sbjct 140022 ATTATACCACCACGAAGACGGAGGACAAGATGAAGTGTTGATTCCTTCTGTATATTATAG 140081 Query 171897 TCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCA 171956 || || | || |||| | || |||| |||||| ||||||||||||| | |||||||| Sbjct 140082 TCGGAAAGAGTTCGTCCATCTTCCAGTTGTTTGCCAGCAAAAATTAGACGTTGTTGGTCT 140141 Query 171957 GGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGAT 172016 ||||| || |||||||||||||| ||||| || || ||| ||||| | | Sbjct 140142 GGTGGGATGCCTTCTTTATCTTGAATTTTCGCCTTAACTGCTTCTATTGTATCAGCAGGC 140201 Query 172017 TCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || |||||||| || || ||||| || || | ||| || | || |||||||| Sbjct 140202 TCAACTTCTAGGGTTATAGTTTTTCCCGTAAGTGTCTTCACAAAAATCTGCAT 140254 >seq2294 Length=11734 Score = 100 bits (110), Expect = 5e-16 Identities = 145/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 171866 ATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCGTTCGTCATCCAATTG 171925 |||||| || | |||||| || || || || || | || ||| | || ||||| || Sbjct 1545 ATGTAAGGTTGACTCTTTCTGGATGTTGTAGTCAGACAGAGTACGTCCATCTTCCAACTG 1486 Query 171926 TTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTT 171985 |||||||| || || || | ||||||||||| || || |||||||| ||||| ||||| Sbjct 1485 CTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTGTCTTGAATTTT 1426 Query 171986 ATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGT 172045 | ||| ||||| |||||||| | || || |||| | ||| || ||||||| Sbjct 1425 AGCTTTCACATTCTCAATAGTATCACTAGGCTCAACCTCTAACGGAATCGTCTTACCAGG 1366 Query 172046 TAATGTTTTAATGAATATCTGCATT 172070 || || || | || || |||||| Sbjct 1365 CAACGTCTTCACAAAGATTTGCATT 1341 Score = 86.0 bits (94), Expect = 1e-11 Identities = 121/170 (71%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||| | || || | || | ||| | ||| | |||||| || || || || Sbjct 1343 ATTCCACCACGTAGACGAAGGACAAGATGCAGAGTCGACTCTTTCTGGATGTTGTAGTCA 1284 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | || ||| | || ||||| || |||||||| || || || | ||||||||||| Sbjct 1283 GACAGAGTACGTCCATCTTCCAACTGCTTACCAGCGAATATCAAACGTTGTTGGTCAGGA 1224 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATC 172009 || || |||||||| ||||| |||||| ||| ||||| |||||||| Sbjct 1223 GGAATACCTTCTTTGTCTTGAATTTTAGCTTTCACATTCTCAATAGTATC 1174 >seq52 Length=730220 Score = 89.7 bits (98), Expect = 9e-13 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 171866 ATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCGTTCGTCATCCAATTG 171925 |||||| || | |||||| || || || || || | || ||| | || ||||| || Sbjct 729711 ATGTAAGGTTGACTCTTTCTGGATGTTGTAGTCAGACAGAGTACGTCCATCTTCCAACTG 729652 Query 171926 TTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTT 171985 |||||||| || || || | ||||||||||| || || |||||||| ||||| ||||| Sbjct 729651 CTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTGTCTTGAATTTT 729592 Query 171986 ATTTTTTACATTAGTTATAGTATC 172009 | ||| ||||| |||||||| Sbjct 729591 AGCTTTCACATTCTCAATAGTATC 729568 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 904798452157200