Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20haematobium_20[refseq_20GCF_5F000699445.1_202014-06- 09] 29,834 sequences; 375,894,156 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq1010 107 6e-18 seq267 95.1 4e-14 seq1115 89.7 2e-12 >seq1010 Length=92424 Score = 107 bits (118), Expect = 6e-18 Identities = 257/384 (67%), Gaps = 6/384 (2%) Strand=Plus/Minus Query 133229 TTAGCGTTTTTTGCTGCGAGTGATGGTATTGTTCTTGAAAATTTAGGAACACGGTTTATG 133288 ||||| || ||||| |||||||| || ||||| || || || | | ||| || | Sbjct 82700 TTAGCTTTCTTTGCGGCGAGTGACGGAATTGTACTCGAGAACCTCCTAGAACGCTTCAGC 82641 Query 133289 GGAGAAGTTCAACTGGCCGAAGCCCGTGCCTTTTATGGGCTACAGATTGCGATGGAAAAT 133348 ||||| || | | || | ||| ||||||||| | ||||| || || || ||| Sbjct 82640 CAGGAAGTCCAGATCCCAGAGGTTCGTTGCTTTTATGGAATGCAGATAGCTATCGAGAAT 82581 Query 133349 ATCCATTCTATCACATATTCTACTCTAATTGATACTTACATCAAAGATACCGTCCAGAAG 133408 || || ||| | || ||| |||||||||| ||||||||||| || | | | Sbjct 82580 ATTCACTCTGAAATGTACTCTTTATTAATTGATACATACATCAAAGACTCCAAAGAAAGG 82521 Query 133409 CACAAACTATTCAACGCCATTAGCGAATTTCCTTGTATTAAAAAGAAATCTGACTGGGCT 133468 || || ||||||||||| ||| | || ||||| || ||| || || | ||||| Sbjct 82520 GACTTTCTCTTCAACGCCATAAGCAACTTAACTTGTGTTGCAAAAAAGGCTCAGTGGGC- 82462 Query 133469 ATTA-AATGGATCCAGGACAAGC--GTGCGAGTTTTGCTACTCGTCTCGTTGCTTTTGCT 133525 |||| | ||||| ||| | | | | |||||| ||| | |||||||||| Sbjct 82461 ATTAGATTGGAT--TGGAGATTCCAAATCTACTTTTGCAGAACGTTTAATTGCTTTTGCA 82404 Query 133526 GTAGTAGAGGGCAtttttttCAGTGGTGCGTTCTGCTCTATTTTTTGGCTTAAAAAGCGT 133585 | ||| || || ||||||| |||| ||| |||| || |||||||| || || Sbjct 82403 GCAGTGGAAGGTGTTTTTTTTTCTGGTAGCTTCGCAGCTATATTCTGGCTTAAGAAACGA 82344 Query 133586 GGTATTCTACCTGGACTGTGTTTT 133609 ||| || | |||||||||| |||| Sbjct 82343 GGTCTTATGCCTGGACTGTCTTTT 82320 >seq267 Length=377552 Score = 95.1 bits (104), Expect = 4e-14 Identities = 229/344 (67%), Gaps = 2/344 (1%) Strand=Plus/Minus Query 302538 ATTTCTTACGGTCATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACG 302597 |||||| || ||| ||| || ||||||| ||||||| || |||| |||||| Sbjct 278211 ATTTCTAACAGTCCCATCGTATTTGATCATAACTGATTCCATAGCTTTAATTAGACGACG 278152 Query 302598 CTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACC 302657 ||||| || |||||| | ||||| || || || || || | || | |||||||| Sbjct 278151 TTGAATGTACCCAGTTTCGGCAGTTTTGACTGCAGTGTCTATCAAGCCTTCTCGACCACC 278092 Query 302658 CATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAA 302717 |||||| || || || | || ||| || || ||| ||||| | |||||||| Sbjct 278091 CATAGCGTGAAAAAAAAATTCAGTGGGTGTTAAACCAGCAAGGTAGGAGTTTTCAACGAA 278032 Query 302718 ACCACGCGCCTCGGGCGAATCGTCGAACTTGG-TAAAGTGTGGCAGGGTCCTGTTCTCAT 302776 ||||| | ||| || || || | ||||| |||| ||||| || || | | | Sbjct 278031 GCCACGAGACTCAGGACCATAATC-ATCTTGGATAAAATGTGGTAGCGTACGATGACGAA 277973 Query 302777 AGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCG 302836 | ||| | || || | || || |||||||| || || |||| || | || | || | Sbjct 277972 AACCGAAGGGAATTCTTTTACCTTCAACGTTTTGTTGACCCACACAAGCGATGACTTGAG 277913 Query 302837 AAATATTTAAATCACTGCCCTTGGAGCCAGCATTTACCATAATA 302880 ||||||| | | | || ||||| ||||| ||||||||| Sbjct 277912 AAATATTAATACGAGAACCTTTGGAACCAGCGACCACCATAATA 277869 Score = 86.0 bits (94), Expect = 2e-11 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 304033 TTGGGGTCAGGTGTAATTACAGAGCGAGCACTAAAATCAACACGCTTACCCATAAGATTA 304092 |||||||| | ||| || |||| ||||| || ||||||||||| |||||||||||| Sbjct 276686 TTGGGGTCGGCTGTGATAACAGTACGAGCTGAGAAGTCAACACGCTTTCCCATAAGATTA 276627 Query 304093 CCCCTAACACGACCGCCCTTACCGTTTAGCCTATCCTTGATTGCCTTCAGGGGGCGACCC 304152 || | || |||||| | ||||| || || | | ||||| | |||||| ||||| || Sbjct 276626 CCTCGAATACGACCAGCTTTACCTTTGAGTCGTTGTTTGATAGACTTCAGTGGGCGTCCA 276567 Query 304153 GA 304154 || Sbjct 276566 GA 276565 >seq1115 Length=78361 Score = 89.7 bits (98), Expect = 2e-12 Identities = 107/143 (75%), Gaps = 2/143 (1%) Strand=Plus/Minus Query 251845 ATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCAGTCCATCA 251904 |||||||||||||| |||||||| || ||||| || || || || ||| | | ||| ||| Sbjct 33598 ATAGTCATACGACTAGGAATAGCGTGTGGATTAATAATAATATCTGGTGTAATTCCTTCA 33539 Query 251905 GCAGTGAAGGGCATATCCTTTTCCTCAATAATG-TTTCCAATAGTTCCCTTTTGTCCGTG 251963 ||||| ||||||| ||| | | |||| | ||||| ||| || || |||||||| Sbjct 33538 CATGTGAATGGCATAT-CTTCTTGACGATAACGAATTCCACAAGTACCTTTCTGTCCGTG 33480 Query 251964 ACGAGAACTGAACTTATCACCAA 251986 ||| | ||| |||||||||| Sbjct 33479 TCGACTAGCGAATTTATCACCAA 33457 Score = 89.7 bits (98), Expect = 2e-12 Identities = 172/248 (69%), Gaps = 8/248 (3%) Strand=Plus/Minus Query 251484 TGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCG 251543 |||||| |||| || ||||||||| ||||||||||| ||||| ||||||||||| || Sbjct 35075 TGCACCATGTGCTATTTGACAATCACGTTCCATTTCACCAAAACGTAGACCACCATCACG 35016 Query 251544 AGCCCTACCCTCGGCAGGCTGACGAGTGAG-ATT--AACCATAGGACCGATGGAGCGGCT 251600 | | ||| || ||| |||||| | || ||| ||| |||||| || || || Sbjct 35015 ACTACGACCTTCCATAGGTTGACGATTAAGTATTTGAAC---AGGACCACGAGAACGACT 34959 Query 251601 ATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCGGGACCGATGAAGAT 251660 ||| ||||||| |||||||| || | ||| || || | | || || | ||| || Sbjct 34958 ATGAATTTTATCATCAACCATATGTTTTAAACGTTGATAATAAGTTGGTCCTAAGAAAAT 34899 Query 251661 GCTCGAA-GGCATTTGCTCTCCAGTTAGAGCGTTATACATAACTTCGTTTCCATTAGATT 251719 ||| |||| || |||||| | | |||||||||| ||| || || || || Sbjct 34898 TTGTGAATTTAATTTTCT-TCCAGTAAATCCATTATACATAATTTCATTACCGGTATGTT 34840 Query 251720 CATAACCA 251727 ||||||| Sbjct 34839 GATAACCA 34832 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471255000482058