Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20haematobium_20[refseq_20GCF_5F000699445.1_202014-06- 09] 29,834 sequences; 375,894,156 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq1104 143 2e-29 seq26094 129 5e-25 seq2294 91.5 1e-13 >seq1104 Length=79538 Score = 143 bits (158), Expect = 2e-29 Identities = 165/219 (75%), Gaps = 6/219 (3%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||| ||| | || || | || |||||||| || || | ||||| ||| | | Sbjct 61494 GATGCAGATTTTTGTGAAGACATTGACTGGTAAAACGATCACTTTGGAAGTCGAACCGAG 61553 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || | || || ||||||||||| ||||||||||| || |||||||| Sbjct 61554 TGACACCATTGAGAATGTGAAGGCTAAGATCCAAGATAAAGAAGGAATCCCACCCGATCA 61613 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT--TCGAGAAACA-TGTCAGATTA 24879 ||| ||| |||||||||| ||||| |||||||| ||| ||| ||| |||| ||||| Sbjct 61614 ACAGCGTCTGATCTTTGCTGGGAAGCAGCTGGAAGATGGTCG---TACATTGTCTGATTA 61670 Query 24880 TAACATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 || || || || || || || || |||||||||||||| Sbjct 61671 CAATATCCAGAAAGAGTCCACTCTTCACTTGGTGTTGCG 61709 Score = 141 bits (156), Expect = 8e-29 Identities = 164/218 (75%), Gaps = 6/218 (3%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| ||| | || || | || |||||||| || || | ||||| ||| | | Sbjct 61723 ATGCAGATTTTTGTGAAGACATTGACTGGTAAAACGATCACTTTGGAAGTCGAACCGAGT 61782 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || ||||||||||| ||||||||||| || ||||||||| Sbjct 61783 GACACCATTGAGAATGTGAAGGCTAAGATCCAAGATAAAGAAGGAATCCCACCCGATCAA 61842 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT--TCGAGAAACA-TGTCAGATTAT 24880 || ||| |||||||||| ||||| |||||||| ||| ||| ||| |||| ||||| Sbjct 61843 CAGCGTCTGATCTTTGCTGGGAAGCAGCTGGAAGATGGTCG---TACATTGTCTGATTAC 61899 Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 || || || || || || || || |||||||||||||| Sbjct 61900 AATATCCAGAAAGAGTCCACTCTTCACTTGGTGTTGCG 61937 Score = 141 bits (156), Expect = 8e-29 Identities = 171/230 (74%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| ||| | || || | || |||||||| || || | ||||| ||| | | Sbjct 62179 ATGCAGATTTTTGTGAAGACATTGACTGGTAAAACGATCACTTTGGAAGTCGAACCGAGT 62238 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || ||||| ||||| ||||||||||| || ||||||||| Sbjct 62239 GACACCATTGAGAATGTGAAGGCTAAGATTCAAGATAAAGAAGGAATCCCACCCGATCAA 62298 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT--TCGAGAAACA-TGTCAGATTAT 24880 || ||| |||||||||| ||||| |||||||| ||| ||| ||| |||| ||||| Sbjct 62299 CAGCGTCTGATCTTTGCTGGGAAGCAGCTGGAAGATGGTCG---TACATTGTCTGATTAC 62355 Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || || || || || || || |||||||||||||| | || ||||| Sbjct 62356 AATATCCAGAAAGAGTCCACTCTTCACTTGGTGTTGCGTCTTCGTGGAGG 62405 Score = 138 bits (152), Expect = 1e-27 Identities = 163/218 (75%), Gaps = 6/218 (3%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| ||| | || || | || |||||||| || || | ||||| ||| | | Sbjct 61951 ATGCAGATTTTTGTGAAGACATTGACTGGTAAAACGATCACTTTGGAAGTCGAACCGAGT 62010 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || ||||| ||||| ||||||||||| || ||||||||| Sbjct 62011 GACACCATTGAGAATGTGAAGGCTAAGATTCAAGATAAAGAAGGAATCCCACCCGATCAA 62070 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT--TCGAGAAACA-TGTCAGATTAT 24880 || ||| |||||||||| ||||| |||||||| ||| ||| ||| |||| ||||| Sbjct 62071 CAGCGTCTGATCTTTGCTGGGAAGCAGCTGGAAGATGGTCG---TACATTGTCTGATTAC 62127 Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 || || || || || || || || |||||||||||||| Sbjct 62128 AATATCCAGAAAGAGTCCACTCTTCACTTGGTGTTGCG 62165 >seq26094 Length=224 Score = 129 bits (142), Expect = 5e-25 Identities = 161/218 (74%), Gaps = 6/218 (3%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| ||| | || || | || |||||||| || || | ||||| ||| | | Sbjct 1 ATGCAGATTTTTGTGAAGACATTGACTGGTAAAACGATCACTTTGGAAGTCGAACCGAGT 60 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || ||||| ||||| ||||||||||| || ||||| || Sbjct 61 GACACCATTGAGAATGTGAAGGCTAAGATTCAAGATAAAGAAGGAATTCCACCCGACCAG 120 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT--TCGAGAAACA-TGTCAGATTAT 24880 || ||| |||||||||| ||||| |||||||| ||| ||| ||| |||| ||||| Sbjct 121 CAGCGTCTGATCTTTGCTGGGAAGCAGCTGGAAGATGGTCG---TACATTGTCTGATTAC 177 Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 || || || || || || || || |||||||||||||| Sbjct 178 AATATCCAGAAAGAGTCCACTCTTCACTTGGTGTTGCG 215 >seq2294 Length=11734 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| |||||| | || ||| | | ||||| || ||| || | || || || | | Sbjct 1342 ATGCAAATCTTTGTGAAGACGTTGCCTGGTAAGACGATTCCGTTAGAGGTTGAGCCTAGT 1401 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || ||| || || |||||||||||||| || ||||| || ||| Sbjct 1402 GATACTATTGAGAATGTGAAAGCTAAAATTCAAGACAAAGAAGGTATTCCTCCTGACCAA 1461 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||||||||||| || || || || ||| |||| ||| | | |||| || || ||| Sbjct 1462 CAACGTTTGATATTCGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGACTACAAC 1521 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || || || || || |||| | || |||| | || |||||| Sbjct 1522 ATCCAGAAAGAGTCAACCTTACATCTTGTTCTGCGCCTACGTGGAGGC 1569 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449729821937520