Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20haematobium_20[refseq_20GCF_5F000699445.1_202014-06- 09] 29,834 sequences; 375,894,156 total letters Query= NC_023009.1 Length=127188 Score E Sequences producing significant alignments: (Bits) Value seq2836 1481 0.0 seq3308 352 2e-92 >seq2836 Length=4769 Score = 1481 bits (1642), Expect = 0.0 Identities = 1079/1246 (87%), Gaps = 16/1246 (1%) Strand=Plus/Minus Query 124715 TTAGCTATACTTGGAATATAGAGCTCATTTAAGAAGCGGTTAAGTAGTTAGAGGGGATTT 124774 |||||||||||||| || ||||||||||||||||||||||||||||||| | | || Sbjct 4168 TTAGCTATACTTGGCATTTAGAGCTCATTTAAGAAGCGGTTAAGTAGTTCATGATAAATT 4109 Query 124775 GTCCTA-AAATAGTATACCGCTTCTATATGGAAGGCTGAGAGGTCTTAGAATTGAAAGGA 124833 | ||| ||||| |||||||||| ||||||||||||||||| |||||||||||||||| Sbjct 4108 GGTCTAGAAATATATTACCGCTTCTCTATGGAAGGCTGAGAGGGCTTAGAATTGAAAGGA 4049 Query 124834 GAGATATAATGATTCATATATTTGTAAAAGAGGATTATAATAAAGAAACATTAAGGAGTT 124893 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 4048 GAGATATAATGATTCATATATTTGTAAAAGAGGATTATAATAAAGAAACATTAAGGAGTT 3989 Query 124894 TACTTGAGTATATTAATGATACTGTAGGTAGGGAATTAACTTATGGTATTAATACAGACT 124953 |||||||||| |||||| |||||||| || |||||||||||||||||||||||||||| Sbjct 3988 TACTTGAGTACATTAATACTACTGTAGATAAAGAATTAACTTATGGTATTAATACAGACT 3929 Query 124954 ATGATAAGGATGTCGTGATTGAAACCGATGACCCTATAGATGAGGAGGATACAATTGAGT 125013 ||||||||||||| ||||||||||||||||||||||||||||||||| |||| ||||| | Sbjct 3928 ATGATAAGGATGTAGTGATTGAAACCGATGACCCTATAGATGAGGAGAATACGATTGATT 3869 Query 125014 TATCAGGTA---CAAACATGTTCAAGGATGACTTATGTATTCTTATAGAAGAGCTATACT 125070 ||||| | | || || || |||||||||||||||||||||||||| |||||| Sbjct 3868 TATCAAATCTTCCTCAC---TTTAAAGATGACTTATGTATTCTTATAGAAGAATTATACT 3812 Query 125071 GTAAGGCATTTGTTAATGGTGAACCTGTTATTATACGTAAGTATGTAGAGGAGATGTTAT 125130 ||||||||||||||||||| |||||| |||||||||||||||||||||||| |||||||| Sbjct 3811 GTAAGGCATTTGTTAATGGGGAACCTATTATTATACGTAAGTATGTAGAGGGGATGTTAT 3752 Query 125131 AATGATTATAATATTTTTAACTGAAAAATATGATGCCAAGGCTTTAAAGAAAGTATTAGA 125190 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3751 AATGATTATAATATTTTTAACTGAAAAATATGATGCCAAGGCTTTAAAGAAAGTATTAGA 3692 Query 125191 ACATATTGATAATTGTAGTAGTAGAGGTCTTAGCTATTTAATGGGAAAAGGAGAAGCGGA 125250 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 3691 ACATATTGATAATTGTAGTAGCAGAGGTCTTAGCTATTTAATGGGAAAAGGAGAAGCGGA 3632 Query 125251 TGTATGTATAGAGAAAAATGTATTTAGAGAAAGAGATGATGTAAGGATTAACTCAAACAT 125310 ||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| Sbjct 3631 TGTATGTATAGAGAAGAATGTATTCAGAGAAAGAGATGATGTAAGGATTAACTCAAACAT 3572 Query 125311 TATTGATGAAGGTAAACTTTGTATACTAATAAATAGACATGGTTTAGAATGTAGCTACTA 125370 ||||||||||||||||||||||||| ||||||||||| |||||||||| ||||| ||||| Sbjct 3571 TATTGATGAAGGTAAACTTTGTATATTAATAAATAGAAATGGTTTAGAGTGTAGTTACTA 3512 Query 125371 TAGAGGTATATCATGTAATATTGGTTCCTTCGTAAAGGAGAGATTATAATGATAGAGATA 125430 ||||||| ||||||||||| | ||| |||| ||||||||||||||||||||||||| ||| Sbjct 3511 TAGAGGTGTATCATGTAATGTGGGTGCCTTTGTAAAGGAGAGATTATAATGATAGAAATA 3452 Query 125431 TACCTTAGTGAAAATTATGATAAGAATTTACTAAAAGCAGAATTAAAATGGATTAAAGAG 125490 || || ||| |||| ||||||||| |||| || ||||||||||| || |||||||||||| Sbjct 3451 TATCTCAGTAAAAACTATGATAAGGATTTGCTCAAAGCAGAATTGAAGTGGATTAAAGAG 3392 Query 125491 ACCGCTTCAAGAGAACTAACTTATGATGTTAATAGAAGTCCAGGATTGGATGTTTATGTT 125550 |||||||||||||||||||||||||||||||||||||| |||||||| ||||| || || Sbjct 3391 ACCGCTTCAAGAGAACTAACTTATGATGTTAATAGAAGCCCAGGATTAGATGTACATATT 3332 Query 125551 AATCCCTATAGGTGTACTAAAGACGAAGTTGAAGAATGGAGTACACTTCCTCCATTTGAA 125610 | ||| | ||| | ||| || || || ||||||||| ||| || ||||| |||||| Sbjct 3331 AGTCCTTTTAGATATACCAAGGATGAGGTTGAAGAAATGAGCTTACATCCTCAGTTTGAA 3272 Query 125611 GATGATATACTTGTATTTATAGCGGAGACGTGGATACATGAATATCTTAAGGGTGAATCA 125670 |||||| || |||||||||||| || || ||||||||||| |||| ||| ||| ||||| Sbjct 3271 GATGATGTATGTGTATTTATAGCTGAAACATGGATACATGAGTATCGTAATGGTAAATCA 3212 Query 125671 ATAGGTGTAGATAGTATGGAAGAGTATGTAAAGGAGATGTAACTAATGTTTAAGGTATAT 125730 ||||||||||||||||||||||| |||||||||||||||||| ||||| | | ||| Sbjct 3211 ATAGGTGTAGATAGTATGGAAGAATATGTAAAGGAGATGTAATTAATGGTAGAAACTTAT 3152 Query 125731 TATACAGTCTACCATAGAGGTAGTATGAAAACTATTAAGGATAAGCTAGATAGAAGTAGT 125790 |||||||| || |||| |||||||||||||||||||||| | || ||||||| | Sbjct 3151 TATACAGTATATCATAAGAATAGTATGAAAACTATTAAGGATTACTTAAGTAGAAGTGAT 3092 Query 125791 TTAATATACTTCTTGTATGATACTTGGTATAAAGATATTAGTAACGTATTCCCTAATCAC 125850 ||||| ||||||| ||| | |||||| |||| ||||| ||||| ||| ||| | | Sbjct 3091 TTAATTGACTTCTTATATAAGACTTGGCATAAGGATATAAGTAATATATACCCAACAGAT 3032 Query 125851 TATAATAAAGAGTTTGGGAGTAA---GAGTGATGATATAGATATAGATAAACTTATTGAA 125907 |||| || || || | || || || |||||| ||| || ||| |||||| Sbjct 3031 TATACTA---CGTATGAAACAAAATTCTGTATAGACATAGATGTAGTTAGACTAATTGAA 2975 Query 125908 GCGGTTAATGAGGAAGGTATATTACTTATCAATAGAGGTAATTATG 125953 ||||||||||| |||||| ||||||||||||| ||||||||| Sbjct 2974 GCGGTTAATGAAGAAGGTGTATTACTTATCAA---CCGTAATTATG 2932 Score = 401 bits (444), Expect = 5e-107 Identities = 312/381 (82%), Gaps = 6/381 (2%) Strand=Plus/Minus Query 126808 CAAAAATAAATACACTAGGA-TATTATTCCTAGTGTATTATATAAtttttttATAGAATA 126866 |||||| |||||||| |||| ||||||||| |||||||| |||||||||||||||||||| Sbjct 1756 CAAAAAAAAATACACCAGGAATATTATTCCCAGTGTATTGTATAATTTTTTTATAGAATA 1697 Query 126867 TTTATAACATTGTATTCAAATTCATTTACTTCATGTTGTGATTTAATTAAATTTTTAATT 126926 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1696 TTTATAACATTGTATTCAAATTCATTTACTTCATGTTGTGATTTAATTAAATTTTTAATT 1637 Query 126927 AATCCGTTTTGTGTTTTATACTCTTTTATTAGNNNNNNNNNNNNNNNNNNNNNNNNNNNN 126986 |||||||||||||||||||| ||||||| ||| Sbjct 1636 AATCCGTTTTGTGTTTTATAGTCTTTTACTAGTTTTTCATTTTCTATAATTAAATTATTA 1577 Query 126987 NNNNNNNNNNNNNNNNNNNCCTCATCTACATAAAATTTACTTTCATATATTTCATAATAT 127046 ||||||||||||||||||||||||||||||||||||||||| Sbjct 1576 AATTCTTCTTTTGTTGTATCCTCATCTACATAAAATTTACTTTCATATATTTCATAATAT 1517 Query 127047 TTTTTATCTGTTCCGCCATCTAAATCATCTGATATTTGATAATTTTTGAATA-TATTTCT 127105 ||||||||||||||| ||| | ||||||||||||||||||||||||||||| |||||| Sbjct 1516 TTTTTATCTGTTCCGTTATCAATATCATCTGATATTTGATAATTTTTGAATACAATTTCT 1457 Query 127106 TTTGTTTCTAATTCATTTACTAATAATTGTGATTTTGCCATATTGTAATACTATATCATT 127165 ||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| Sbjct 1456 TTTGTTTCTAATTCATTTACTAATAATTGTGATTTTG-CATATTGTAATACGTCTTCATT 1398 Query 127166 GTCCCCATCATTGGTAATATA 127186 ||||| |||||| |||||| Sbjct 1397 GTCCC--ACATTGG-AATATA 1380 Score = 167 bits (184), Expect = 2e-36 Identities = 215/287 (75%), Gaps = 15/287 (5%) Strand=Plus/Minus Query 124079 TTTAATGTACTTAAAATAGTAAGTAGCTAC-TTATCATTTAGGGTTCTATAATTGAGAAT 124137 |||||||||| |||||||||||||||| | |||||||||||| | ||||||||||||| Sbjct 4769 TTTAATGTACCTAAAATAGTAAGTAGCCCCCTTATCATTTAGGTCTGTATAATTGAGAAT 4710 Query 124138 ATTGAGAGATAATCCGCTTCAATTGTAATTAATTGTTGACAACTATGAAGCGGGTATGCT 124197 ||| ||||| |||||||||||| ||||||||||||||||||||||||| ||| || | Sbjct 4709 ATTAGAAGATA-TCCGCTTCAATTACAATTAATTGTTGACAACTATGAAGC-GGTCTGTT 4652 Query 124198 ATAATTAGGTATAGTCAAATTTAGGAGATGAAATAGATGATTGATATATACTTA-GGAGA 124256 ||| ||| ||||| | |||||||||| | ||||||||||| || ||| || Sbjct 4651 ATACTTA-GTATA-------TAAGGAGATGAATAATATGATTGATATTTATTTACACAGT 4600 Query 124257 AGGTTATAATAAAGAATACTT-GTCTAAAGCACTCAGATTAATCAATGACCATGCTCCTA 124315 | | |||| |||||| | || | | | || | | ||| | || | |||||| Sbjct 4599 A-GATATAGTAAAGATAAGTTAAAATTTATC-CTTAAAGCAATAAGGGATTTTTCTCCTA 4542 Query 124316 GGGAGTTAAGTTATGATTTTAATAATGTAGAAGCGGATGTTAATATT 124362 | || |||| || ||||||| ||| | ||||||||||| |||| Sbjct 4541 GAGAATTAACCTACGATTTTAGAAATCCAAAAGCGGATGTTCGTATT 4495 >seq3308 Length=2910 Score = 352 bits (390), Expect = 2e-92 Identities = 229/255 (90%), Gaps = 0/255 (0%) Strand=Plus/Minus Query 2 GATGAACAATAATACTACTTTATATAGTAATAGCCCATATGGTAGCTTAGAAGAGNNNNN 61 |||||||||||| || ||| |||||||||| || |||||||||||||||||||| Sbjct 255 GATGAACAATAACACCGCTTCATATAGTAATGGCTCATATGGTAGCTTAGAAGAGCTTAG 196 Query 62 NNNNNNTTATGACCTATCGTCATTATCTACTGGTGAGATTAAAGAACTAATACAAACATT 121 |||||||||||| ||||||||||||| |||||||||||||||||||||||||| Sbjct 195 AGAAGCTTATGACCTATCTTCATTATCTACTGAGGAGATTAAAGAACTAATACAAACATT 136 Query 122 TGTTTAAATTATTTTATCAAAACGCTTTACAATCTTTTAGTTTGTATGGTATAATGAACT 181 ||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||| Sbjct 135 TGTTTAAATTATTTTATCAAAACGCTTTACAATATTTTAATTTGTATGATATAATGAACT 76 Query 182 TAACAAATTAAAAGAAAAGGAAATGATGAACATGAGAAACTTATTAGAGCAGGAACAATT 241 ||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| Sbjct 75 TAACAAATTAAAAGAAAAGGAAATGATGAACATGACAAACTTATTAGAACAGGAACAATT 16 Query 242 AGAAAAAGATGTAAA 256 ||||||||| ||||| Sbjct 15 AGAAAAAGACGTAAA 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406728858832626