Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20haematobium_20[refseq_20GCF_5F000699445.1_202014-06- 09] 29,834 sequences; 375,894,156 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq523 118 8e-22 seq2294 87.8 1e-12 >seq523 Length=224339 Score = 118 bits (130), Expect = 8e-22 Identities = 158/217 (73%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || || | |||||| || ||||| || || || ||||| || | || || || Sbjct 140039 ACGGAGGACAAGATGAAGTGTTGATTCCTTCTGTATATTATAGTCGGAAAGAGTTCGTCC 140098 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || ||||||||||||||| | || | | ||| || || || || || || ||||| Sbjct 140099 ATCTTCCAGTTGTTTGCCAGCAAAAATTAGACGTTGTTGGTCTGGTGGGATGCCTTCTTT 140158 Query 29691 GTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 ||||| |||||| | || || | ||||| || |||| | | || ||||| || |||| Sbjct 140159 ATCTTG-AATTTTCGCCTTAACTGCTTCTATTGTATCAGCAGGCTCAACTTCTAGGGTTA 140217 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||||| || || | || || ||||| |||||||| Sbjct 140218 TAGTTTTTCCCGTAAGTGTCTTCACAAAAATCTGCAT 140254 >seq2294 Length=11734 Score = 87.8 bits (96), Expect = 1e-12 Identities = 151/217 (70%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 ||||| || | ||| | || || ||||| || ||||| || || | | || || | Sbjct 1556 CGCAGAACAAGATGTAAGGTTGACTCTTTCTGGATGTTGTAGTCAGACAGAGTACGTCCA 1497 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || | || || ||||| ||||||| | ||| || || || |||||||| |||||| Sbjct 1496 TCTTCCAACTGCTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTG 1437 Query 29692 TCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 ||||| |||||| | ||| ||| | || | ||| ||| | | || || || | | || Sbjct 1436 TCTTG-AATTTTAGCTTTCACATTCTCAATAGTATCACTAGGCTCAACCTCTAACGGAAT 1378 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 || || |||| || || || ||||| || |||||| Sbjct 1377 CGTCTTACCAGGCAACGTCTTCACAAAGATTTGCATT 1341 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385079133576594