Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20haematobium_20[refseq_20GCF_5F000699445.1_202014-06- 09] 29,834 sequences; 375,894,156 total letters Query= NC_023613.1 Length=204815 Score E Sequences producing significant alignments: (Bits) Value seq1115 104 3e-17 >seq1115 Length=78361 Score = 104 bits (114), Expect = 3e-17 Identities = 195/284 (69%), Gaps = 2/284 (1%) Strand=Plus/Plus Query 201876 GAAACAATGTATTGTGGTTTTACCGGAAGAAAAATTCAAAGTA-AAATTTTTATAGGCCC 201934 |||| |||||| ||| ||||| ||||||||| || || | ||||||| |||| || Sbjct 34854 GAAATTATGTATAATGGATTTACTGGAAGAAAA-TTAAATTCACAAATTTTCTTAGGACC 34912 Query 201935 AACATACTATCATCGTCTTAAACATATGGTTAAGGATAAAATGCATGCGAGAAGTCATGG 201994 ||| || ||||| ||| | |||||||||||| | |||||||| ||| | || ||| Sbjct 34913 AACTTATTATCAACGTTTAAAACATATGGTTGATGATAAAATTCATAGTCGTTCTCGTGG 34972 Query 201995 TCAAGTAACAACATTACATCGTCAACCAAACTGTGGTCGGTCCCAAGGTGGTGGATTAAG 202054 || || || | | |||||||||| | ||||| | | |||||| || | Sbjct 34973 TCCTGTTCAAATACTTAATCGTCAACCTATGGAAGGTCGTAGTCGTGATGGTGGTCTACG 35032 Query 202055 ATTTGGAGAAATGGAAAAAGATTGTATTTTGGTTCATGGGGCCACACAATTTTTAAATGA 202114 ||||| ||||||||| |||||| | | ||||| || ||||||||||| ||| Sbjct 35033 TTTTGGTGAAATGGAACGTGATTGTCAAATAGCACATGGTGCAGCACAATTTTTACGTGA 35092 Query 202115 AAGAATGTTTTTGTATTCAGATCCTTTTCAAATCGATGTGTGTA 202158 | | | ||||| | ||||| | |||| | |||| |||| Sbjct 35093 ACGTTTATTTTTTGCTAGTGATCCATATCAAGTGTATGTTTGTA 35136 Score = 84.2 bits (92), Expect = 3e-11 Identities = 125/174 (72%), Gaps = 5/174 (3%) Strand=Plus/Plus Query 201147 GGTATTAATGCAATTGTAGCAATTGCATGTTACACTGGATACAATCAAGAAGATAGTGTT 201206 ||||| ||||||||||| ||||||||| || || || || |||||||||||| ||| Sbjct 25639 GGTATCAATGCAATTGTTGCAATTGCAACATATACCGGTTATAATCAAGAAGATTCTGTG 25698 Query 201207 ATTCTTAATAAAGCATCTATTGAAAGAGGTTTATTCGGTACCACAA-CTTATAATACTTT 201265 ||| | ||| || |||| || | ||||| || | | || || |||| ||||| Sbjct 25699 ATTATCAATGAAAGTGCTATACAACGTGGTTTCTTTCG-ATCAGAATTTTATCGTACTTA 25757 Query 201266 TACAGCTGAAGAAACAAAAAATGGTATAG---TAGAGGAAAGGATTGATATACC 201316 || || | |||||||| | ||||||| | |||||||| | |||| | ||| Sbjct 25758 TAAAGATCAAGAAACACGACATGGTATGGATTTAGAGGAAGTGTTTGAAAAACC 25811 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 655035629706000